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Os08g0169600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA polymerase II transcription factor SIII subunit A family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0158) R2 : 0.0925
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.227 (0.0333) R2dN8 : 0.119 R2N8 : 0.0925
σ : 0.298
deviance : 40.78
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_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.74 0.192 11.9 -0.691 0.238 -0.368 0.369 -0.821 0.17 3.45 37.47 382 -- --
17.34 0.194 11.9 -0.664 0.231 -0.362 0.618 -- 0.179 3.39 37.61 388 -- --
17.01 0.192 11.9 -0.71 0.239 -0.347 -- -1.05 0.171 3.59 35 370 -- --
18.5 0.2 11.9 -0.674 0.244 -0.343 -- -- 0.17 3.64 35 389 -- --
18.88 0.202 11.9 -0.654 -- -0.533 -- -0.899 0.184 -- 27.37 376 -- --
19.19 0.205 11.9 -0.68 0.388 -- 0.622 -- 0.146 3.7 -- -- -- --
20.34 0.211 11.9 -0.689 0.393 -- -- -- 0.142 3.81 -- -- -- --
19.81 0.207 11.9 -0.623 -- -0.497 -- -- 0.207 -- 20.35 394 -- --
29.55 0.253 11.9 -- 0.189 -0.402 -- -- 0.241 3.87 30.01 391 -- --
28.84 0.251 11.9 -0.673 -- -- -- -- 0.153 -- -- -- -- --
32.86 0.268 11.9 -- 0.379 -- -- -- 0.219 3.83 -- -- -- --
29.83 0.254 11.9 -- -- -0.547 -- -- 0.276 -- 20.08 421 -- --
40.78 0.298 11.9 -- -- -- -- -- 0.227 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.75 temperature 20.0 270 > th dose dependent rect. 8 8
4 16.79 radiation 40.0 270 < th dose independent rect. 16 23
10 16.83 temperature 25.0 270 > th dose dependent rect. 4 11
16 16.85 radiation 40.0 270 < th dose independent rect. 9 13
20 16.87 radiation 40.0 270 < th dose independent rect. 17 20
21 16.88 temperature 30.0 270 < th dose independent rect. 3 10
27 16.92 radiation 30.0 270 < th dose independent rect. 17 18
37 16.94 temperature 30.0 90 < th dose independent rect. 19 20
39 16.95 radiation 40.0 270 < th dose independent rect. 7 14
43 16.97 temperature 15.0 1440 > th dose independent rect. 21 2
44 16.98 radiation 40.0 270 < th dose independent rect. 3 10
50 17.00 temperature 30.0 270 > th dose independent rect. 8 7
90 17.03 radiation 40.0 270 < th dose dependent rect. 17 20
109 17.04 temperature 20.0 1440 < th dose dependent rect. 11 15
110 17.04 radiation 40.0 270 < th dose dependent rect. 17 18
112 17.04 radiation 20.0 270 > th dose dependent rect. 12 23
119 17.06 temperature 25.0 270 > th dose dependent sin 4 NA
135 17.07 temperature 20.0 1440 < th dose dependent sin 18 NA
180 17.11 radiation 40.0 270 < th dose dependent rect. 7 14
191 17.13 temperature 30.0 270 > th dose independent sin 4 NA
194 17.13 temperature 15.0 90 > th dose independent rect. 21 23
196 17.13 temperature 25.0 270 > th dose dependent rect. 11 3
200 17.14 temperature 20.0 30 > th dose independent rect. 20 19
226 17.15 radiation 40.0 270 > th dose independent rect. 12 23
234 17.15 temperature 15.0 270 > th dose dependent rect. 22 18
250 17.18 temperature 30.0 270 < th dose independent sin 4 NA
252 17.18 precipitation 0.1 14400 < th dose independent rect. 6 1
255 17.18 temperature 20.0 1440 < th dose independent rect. 7 19
261 17.18 precipitation 0.1 14400 < th dose dependent rect. 6 1
268 17.18 temperature 10.0 270 > th dose dependent rect. 21 20
272 17.18 temperature 10.0 270 > th dose dependent rect. 19 22
283 17.20 humidity 60.0 270 < th dose independent rect. 13 1
286 17.20 temperature 20.0 1440 < th dose independent rect. 9 17
289 17.20 temperature 20.0 1440 > th dose independent rect. 7 19
313 17.21 wind 1.0 43200 > th dose dependent rect. 24 1
343 17.23 precipitation 0.1 14400 > th dose independent rect. 6 1
344 17.23 wind 1.0 43200 > th dose independent rect. 9 2
348 17.23 temperature 20.0 1440 > th dose independent rect. 9 17
353 17.23 precipitation 0.1 14400 > th dose dependent rect. 6 1
370 17.24 temperature 30.0 90 < th dose independent rect. 7 15
397 17.25 wind 1.0 43200 < th dose independent rect. 9 2
405 17.25 temperature 20.0 10 > th dose independent rect. 20 17
409 17.25 temperature 15.0 270 > th dose independent rect. 16 23
448 17.27 temperature 30.0 90 < th dose independent rect. 7 8
473 17.28 radiation 30.0 4320 < th dose independent rect. 24 7
498 17.28 wind 5.0 1440 > th dose dependent rect. 1 5
512 17.29 temperature 20.0 1440 < th dose independent sin 19 NA
513 17.29 humidity 60.0 43200 > th dose independent rect. 18 1
516 17.29 temperature 20.0 30 > th dose independent rect. 18 21
518 17.29 humidity 70.0 270 < th dose dependent rect. 13 1
521 17.29 humidity 90.0 1440 > th dose dependent rect. 10 8
532 17.30 humidity 60.0 43200 < th dose independent rect. 18 1
534 17.30 precipitation 0.1 14400 > th dose independent rect. 6 5
535 17.30 temperature 10.0 43200 > th dose independent rect. 14 6
543 17.30 radiation 20.0 270 > th dose dependent sin 22 NA
544 17.30 radiation 20.0 270 > th dose dependent no NA NA
545 17.30 precipitation 0.1 14400 > th dose dependent rect. 6 5
551 17.30 radiation 20.0 270 > th dose dependent rect. 7 9
679 17.31 precipitation 0.1 14400 > th dose independent rect. 6 3
681 17.31 precipitation 0.1 14400 < th dose independent rect. 6 5
693 17.31 precipitation 0.1 14400 > th dose dependent rect. 6 3
695 17.31 precipitation 0.1 14400 < th dose dependent rect. 6 5
723 17.32 temperature 20.0 1440 > th dose independent sin 19 NA
750 17.32 radiation 40.0 270 < th dose independent rect. 24 23
787 17.32 temperature 20.0 1440 < th dose dependent rect. 24 23
791 17.33 humidity 90.0 14400 < th dose independent rect. 12 1
793 17.33 temperature 15.0 1440 > th dose independent rect. 14 6
794 17.33 precipitation 0.1 14400 > th dose independent rect. 6 7
806 17.33 temperature 25.0 90 > th dose dependent sin 0 NA
807 17.33 temperature 20.0 1440 < th dose dependent no NA NA
810 17.33 precipitation 0.1 14400 > th dose dependent rect. 6 7
818 17.33 temperature 20.0 1440 < th dose dependent rect. 1 21
834 17.34 wind 5.0 1440 > th dose independent rect. 1 5
835 17.34 atmosphere 1005.0 90 < th dose independent rect. 12 5
844 17.34 humidity 90.0 1440 > th dose independent rect. 10 9
868 17.34 temperature 15.0 270 > th dose independent rect. 19 23
871 17.34 humidity 70.0 270 < th dose dependent rect. 12 3
872 17.34 humidity 90.0 14400 > th dose dependent rect. 10 4
892 17.34 temperature 20.0 1440 < th dose dependent rect. 21 23
909 17.35 wind 7.0 43200 < th dose dependent rect. 24 1
937 17.35 temperature 20.0 1440 < th dose dependent rect. 18 23
942 17.36 humidity 70.0 43200 > th dose independent rect. 6 1
943 17.36 atmosphere 1005.0 270 < th dose independent rect. 13 1
944 17.36 radiation 20.0 43200 < th dose independent rect. 24 6
959 17.36 radiation 1.0 14400 < th dose dependent rect. 6 2