FiT-DB / Search/ Help/ Sample detail

Os08g0166400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, SWIM-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.86 (0.0202) R2 : 0.674
β1 : 1.6 (0.0742) R2dD : 0.345 R2D : 0.279
β2 : 1.11 (0.0498) R2dC : 0.359 R2C : 0.328
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.282 (0.0433) R2dN8 : 0.0409 R2N8 : -0.0132
σ : 0.381
deviance : 66.16
__
_____
C
peak time of C : 14.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.92 0.339 6.9 1.29 0.772 0.917 0.966 -1.26 0.146 14.5 24.5 10 -- --
52.45 0.34 6.88 1.45 0.788 0.831 0.768 -- 0.194 14.5 24.5 10 -- --
54.52 0.347 6.88 1.45 0.768 0.892 -- -0.113 0.19 14.5 24.5 10 -- --
54.52 0.346 6.88 1.47 0.771 0.882 -- -- 0.196 14.5 24.57 8 -- --
75.8 0.406 6.92 1.19 -- 1.67 -- -1.01 0.0524 -- 24.3 10 -- --
62.59 0.371 6.87 1.57 1.11 -- 1.01 -- 0.277 14.6 -- -- -- --
66.16 0.381 6.86 1.6 1.11 -- -- -- 0.282 14.6 -- -- -- --
76.33 0.407 6.91 1.32 -- 1.59 -- -- 0.084 -- 24.26 9 -- --
107.05 0.482 6.94 -- 0.597 1.25 -- -- -0.0616 14.5 22.81 12 -- --
138.79 0.55 6.87 1.55 -- -- -- -- 0.254 -- -- -- -- --
133.46 0.54 6.9 -- 1.08 -- -- -- 0.104 14.6 -- -- -- --
120.51 0.511 6.95 -- -- 1.78 -- -- -0.128 -- 23.19 12 -- --
202.21 0.664 6.91 -- -- -- -- -- 0.0824 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.73 temperature 10.0 10 > th dose dependent rect. 5 21
23 50.27 temperature 30.0 30 < th dose dependent rect. 2 18
26 50.32 temperature 30.0 270 < th dose independent rect. 23 20
41 51.19 temperature 20.0 30 > th dose dependent rect. 5 13
52 51.44 temperature 30.0 90 < th dose dependent rect. 9 11
55 51.46 temperature 30.0 90 < th dose dependent rect. 11 10
60 51.56 temperature 30.0 10 < th dose dependent rect. 10 11
89 51.90 temperature 30.0 720 < th dose dependent rect. 8 3
100 52.02 temperature 25.0 10 > th dose dependent rect. 19 23
125 52.14 temperature 30.0 10 < th dose dependent rect. 24 22
129 52.16 radiation 1.0 10 < th dose dependent rect. 2 18
140 52.20 temperature 25.0 10 > th dose dependent no NA NA
155 52.25 temperature 25.0 10 > th dose dependent rect. 22 23
159 52.27 temperature 30.0 270 < th dose independent rect. 8 11
180 52.40 temperature 20.0 10 > th dose dependent sin 23 NA
217 52.54 temperature 25.0 30 < th dose independent rect. 2 19
222 52.55 radiation 1.0 10 < th dose dependent rect. 2 15
250 52.63 radiation 1.0 10 < th dose dependent sin 1 NA
269 52.71 temperature 30.0 10 < th dose dependent rect. 2 14
286 52.79 radiation 1.0 10 < th dose independent rect. 2 15
300 52.82 atmosphere 995.0 10 > th dose dependent rect. 2 3
304 52.85 temperature 10.0 720 > th dose dependent rect. 4 11
330 52.96 wind 9.0 10 < th dose independent rect. 5 21
338 52.98 radiation 1.0 10 < th dose independent rect. 2 18
339 52.98 temperature 10.0 10 > th dose dependent rect. 2 3
366 53.07 temperature 30.0 720 < th dose independent rect. 7 5
396 53.20 temperature 15.0 720 > th dose dependent rect. 5 2
398 53.21 atmosphere 1000.0 10 > th dose independent rect. 2 3
401 53.22 precipitation 0.1 30 < th dose independent rect. 5 21
407 53.22 precipitation 0.1 30 < th dose dependent rect. 5 21
425 53.25 temperature 25.0 10 > th dose dependent rect. 16 23
429 53.27 radiation 1.0 10 < th dose dependent rect. 24 21
430 53.27 temperature 25.0 10 > th dose dependent rect. 11 23
432 53.28 wind 7.0 10 < th dose independent rect. 2 3
444 53.33 temperature 10.0 10 > th dose independent rect. 2 3
446 53.33 temperature 30.0 10 < th dose independent rect. 2 3
447 53.33 humidity 50.0 10 > th dose independent rect. 2 3
452 53.33 atmosphere 1010.0 10 < th dose independent rect. 2 3
454 53.33 radiation 1.0 10 < th dose independent rect. 2 3
460 53.33 temperature 10.0 10 > th dose independent rect. 5 21
462 53.33 radiation 10.0 10 < th dose dependent rect. 2 3
469 53.35 precipitation 0.1 10 < th dose independent rect. 2 3
471 53.35 precipitation 0.1 10 < th dose dependent rect. 2 3
533 53.45 temperature 30.0 10 < th dose independent rect. 2 14
547 53.49 radiation 1.0 10 < th dose dependent rect. 2 12
551 53.50 wind 9.0 30 < th dose dependent rect. 5 21
557 53.53 wind 9.0 10 < th dose dependent rect. 2 3
579 53.57 temperature 30.0 10 < th dose dependent sin 23 NA
603 53.63 humidity 50.0 10 > th dose dependent rect. 2 3
626 53.67 temperature 10.0 720 > th dose dependent rect. 4 5
631 53.68 temperature 30.0 720 < th dose independent rect. 24 12
642 53.70 radiation 1.0 10 < th dose independent sin 2 NA
648 53.71 radiation 1.0 10 < th dose dependent rect. 2 10
663 53.73 radiation 1.0 10 < th dose independent rect. 2 12
665 53.73 humidity 70.0 10 > th dose dependent rect. 2 18
685 53.77 radiation 30.0 720 < th dose independent rect. 15 14
692 53.78 atmosphere 995.0 10 > th dose independent rect. 5 21
697 53.78 humidity 70.0 10 > th dose dependent rect. 9 20
706 53.80 temperature 20.0 720 > th dose independent rect. 5 1
724 53.84 humidity 50.0 10 > th dose independent rect. 5 21
731 53.85 temperature 25.0 10 < th dose independent rect. 10 11
732 53.85 radiation 1.0 10 < th dose independent rect. 24 22
760 53.90 humidity 60.0 10 > th dose dependent rect. 10 10
775 53.93 radiation 1.0 10 < th dose dependent rect. 2 6
780 53.94 radiation 1.0 10 < th dose independent rect. 2 10
798 53.97 temperature 30.0 10 < th dose independent rect. 2 12
811 54.00 wind 9.0 4320 < th dose independent rect. 3 3
840 54.03 radiation 20.0 720 < th dose dependent rect. 17 10
847 54.03 humidity 70.0 10 > th dose dependent rect. 24 22
905 54.13 radiation 10.0 43200 < th dose dependent rect. 21 6
914 54.15 radiation 1.0 10 < th dose independent rect. 2 6
948 54.19 temperature 25.0 10 < th dose independent rect. 8 13
955 54.20 temperature 25.0 10 > th dose independent rect. 6 17
962 54.20 temperature 25.0 10 > th dose dependent rect. 13 23
972 54.22 temperature 25.0 10 > th dose independent rect. 6 12
982 54.23 humidity 70.0 90 > th dose independent rect. 13 16