Os08g0165800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TatD-related deoxyribonuclease family protein.
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Os08g0165800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TatD-related deoxyribonuclease family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.21 | 0.554 | 6.67 | -0.988 | 1.94 | 1.62 | 0.475 | -2.14 | -0.361 | 20.5 | 25.62 | 103 | -- | -- |
| 140.69 | 0.552 | 6.63 | -0.751 | 1.95 | 1.43 | 0.475 | -- | -0.3 | 20.4 | 25.7 | 100 | -- | -- |
| 139.73 | 0.551 | 6.66 | -0.977 | 1.92 | 1.62 | -- | -2.04 | -0.346 | 20.5 | 25.7 | 116 | -- | -- |
| 141.3 | 0.554 | 6.63 | -0.77 | 1.92 | 1.44 | -- | -- | -0.299 | 20.4 | 25.66 | 121 | -- | -- |
| 266.66 | 0.761 | 6.65 | -1.31 | -- | 2.6 | -- | -2.44 | -0.496 | -- | 25.1 | 482 | -- | -- |
| 172.29 | 0.615 | 6.62 | -0.525 | 2.2 | -- | 0.914 | -- | -0.23 | 19.5 | -- | -- | -- | -- |
| 174.6 | 0.619 | 6.62 | -0.547 | 2.2 | -- | -- | -- | -0.228 | 19.5 | -- | -- | -- | -- |
| 270.69 | 0.766 | 6.61 | -0.979 | -- | 2.37 | -- | -- | -0.434 | -- | 24.96 | 479 | -- | -- |
| 156.32 | 0.582 | 6.62 | -- | 1.96 | 1.26 | -- | -- | -0.209 | 20.2 | 25.7 | 121 | -- | -- |
| 432.48 | 0.972 | 6.57 | -0.58 | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
| 182.48 | 0.632 | 6.61 | -- | 2.2 | -- | -- | -- | -0.167 | 19.5 | -- | -- | -- | -- |
| 295.13 | 0.8 | 6.58 | -- | -- | 2.23 | -- | -- | -0.31 | -- | 25.06 | 460 | -- | -- |
| 441.36 | 0.981 | 6.56 | -- | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.16 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 14 |
| 12 | 137.68 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 18 | 137.83 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 20 | 137.89 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 57 | 139.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 79 | 139.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 80 | 139.54 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 109 | 139.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 11 |
| 118 | 140.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 167 | 140.94 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 168 | 140.96 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 255 | 141.92 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 263 | 142.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 319 | 142.49 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 341 | 142.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 430 | 143.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 558 | 143.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 626 | 144.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 629 | 144.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 690 | 145.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 714 | 145.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 731 | 145.44 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 793 | 145.94 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 11 |
| 839 | 146.24 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 6 |
| 884 | 146.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 965 | 147.16 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |