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Os08g0165200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.27 (0.0231) R2 : 0.0329
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.192 (0.0486) R2dN8 : 0.0425 R2N8 : 0.0329
σ : 0.435
deviance : 86.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.49 0.383 9.16 0.624 0.104 0.94 -1.25 -5.41 -0.116 17.7 29.54 4361 -- --
71.91 0.395 9.24 -0.0757 0.0648 0.535 -1.49 -- -0.0331 17.8 21.5 24141 -- --
69.26 0.388 9.13 0.775 0.149 0.856 -- -4.96 0.0174 17.5 28.93 4874 -- --
74.74 0.403 9.22 -0.00674 0.0884 0.561 -- -- -0.0237 17.1 19.9 21458 -- --
70.17 0.39 9.16 0.559 -- 0.76 -- -4.18 -0.0253 -- 28.91 4858 -- --
74.35 0.404 9.28 -0.571 0.0872 -- -1.22 -- -0.247 17.7 -- -- -- --
77.93 0.413 9.28 -0.563 0.0867 -- -- -- -0.252 16.2 -- -- -- --
74.98 0.403 9.23 -0.0135 -- 0.563 -- -- -0.0549 -- 19.7 21437 -- --
74.72 0.403 9.22 -- 0.0746 0.57 -- -- -0.0322 16.5 19.9 21457 -- --
78.34 0.414 9.28 -0.566 -- -- -- -- -0.254 -- -- -- -- --
86.27 0.434 9.27 -- 0.0975 -- -- -- -0.189 16.1 -- -- -- --
74.99 0.403 9.23 -- -- 0.556 -- -- -0.0517 -- 19.7 21458 -- --
86.79 0.435 9.27 -- -- -- -- -- -0.192 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.53 humidity 90 43200 < th dose independent rect. 14 1
2 65.95 humidity 80 43200 > th dose dependent rect. 14 1
3 65.99 humidity 80 43200 > th dose independent rect. 5 10
7 66.25 temperature 15 270 > th dose dependent rect. 12 9
8 66.26 humidity 80 43200 < th dose independent rect. 5 11
9 66.29 humidity 80 43200 > th dose independent sin 1 NA
10 66.30 humidity 80 43200 > th dose independent rect. 3 15
12 66.35 humidity 80 43200 < th dose independent rect. 4 13
13 66.36 humidity 70 43200 > th dose dependent rect. 3 14
19 66.41 humidity 80 43200 < th dose independent rect. 3 15
24 66.49 humidity 90 90 < th dose independent rect. 21 17
27 66.51 humidity 80 43200 < th dose independent sin 1 NA
32 66.55 wind 9 43200 > th dose dependent rect. 18 14
38 66.61 temperature 20 10 > th dose independent rect. 14 8
44 66.64 humidity 90 43200 > th dose independent rect. 14 1
48 66.66 humidity 80 43200 < th dose independent rect. 7 8
51 66.66 humidity 70 43200 > th dose dependent sin 2 NA
55 66.68 humidity 90 90 > th dose independent sin 6 NA
56 66.68 temperature 30 4320 < th dose independent rect. 13 3
59 66.69 humidity 80 43200 > th dose dependent rect. 24 18
63 66.70 temperature 25 270 > th dose dependent rect. 12 23
64 66.71 humidity 80 43200 > th dose dependent rect. 7 22
65 66.72 humidity 80 43200 > th dose dependent rect. 2 23
83 66.76 humidity 80 43200 > th dose dependent rect. 24 23
85 66.77 temperature 20 90 > th dose dependent rect. 14 8
89 66.78 radiation 40 10 > th dose dependent rect. 11 1
95 66.79 humidity 80 43200 > th dose dependent no NA NA
106 66.80 atmosphere 995 43200 < th dose dependent rect. 13 2
114 66.82 humidity 80 43200 > th dose dependent rect. 10 17
115 66.82 humidity 80 43200 > th dose dependent rect. 10 23
117 66.83 radiation 20 43200 > th dose independent rect. 6 1
132 66.83 humidity 80 43200 > th dose dependent rect. 16 23
137 66.85 temperature 20 4320 > th dose independent rect. 21 1
138 66.85 temperature 30 4320 > th dose independent rect. 13 3
141 66.85 humidity 80 43200 > th dose dependent sin 4 NA
144 66.85 humidity 80 43200 > th dose dependent rect. 11 15
156 66.86 humidity 80 43200 > th dose dependent rect. 14 23
157 66.87 atmosphere 1000 4320 < th dose independent rect. 12 1
185 66.93 radiation 40 4320 < th dose independent rect. 4 4
187 66.93 atmosphere 995 43200 < th dose dependent rect. 10 7
192 66.94 humidity 80 43200 > th dose dependent sin 17 NA
196 66.95 temperature 25 720 > th dose dependent rect. 9 2
197 66.95 radiation 20 43200 > th dose dependent rect. 6 2
214 66.96 temperature 25 720 > th dose independent rect. 9 2
222 66.97 temperature 20 4320 < th dose independent rect. 21 1
237 67.01 atmosphere 1000 4320 > th dose independent rect. 11 1
239 67.01 temperature 20 10 > th dose independent rect. 14 16
244 67.02 humidity 90 90 > th dose independent rect. 24 11
245 67.02 radiation 40 1440 < th dose independent rect. 16 15
246 67.02 atmosphere 995 43200 < th dose dependent rect. 11 5
263 67.05 temperature 25 270 > th dose dependent sin 20 NA
270 67.06 wind 9 43200 > th dose dependent rect. 18 7
287 67.09 temperature 20 1440 > th dose dependent rect. 6 2
289 67.09 radiation 40 10 > th dose dependent rect. 13 23
290 67.10 humidity 90 90 < th dose independent sin 7 NA
295 67.10 temperature 25 720 > th dose dependent rect. 20 15
309 67.12 wind 9 43200 > th dose dependent rect. 18 9
310 67.12 wind 9 43200 > th dose dependent rect. 18 11
315 67.13 wind 1 43200 < th dose independent rect. 16 3
317 67.13 temperature 25 720 > th dose dependent sin 7 NA
325 67.14 wind 1 43200 > th dose independent rect. 16 3
330 67.14 temperature 15 30 > th dose dependent rect. 14 16
337 67.16 humidity 90 43200 > th dose independent rect. 12 20
340 67.16 temperature 25 270 > th dose dependent rect. 9 12
371 67.20 wind 9 43200 > th dose independent rect. 18 3
373 67.20 radiation 20 90 > th dose dependent rect. 11 1
378 67.21 radiation 40 10 > th dose independent rect. 11 1
381 67.21 temperature 30 4320 < th dose independent rect. 7 9
384 67.21 temperature 30 4320 < th dose independent rect. 24 16
425 67.22 temperature 25 720 > th dose dependent rect. 22 14
464 67.26 humidity 90 43200 > th dose independent rect. 12 16
467 67.26 temperature 25 720 > th dose dependent rect. 1 11
475 67.27 atmosphere 995 43200 > th dose independent rect. 11 3
479 67.27 radiation 40 90 > th dose dependent rect. 11 1
500 67.29 atmosphere 1000 4320 < th dose dependent rect. 12 1
505 67.29 humidity 80 43200 > th dose dependent rect. 17 7
525 67.30 temperature 25 270 > th dose dependent rect. 1 20
540 67.32 temperature 30 4320 < th dose independent rect. 13 15
555 67.33 temperature 30 4320 < th dose independent rect. 13 12
577 67.34 temperature 25 270 > th dose dependent rect. 4 17
586 67.35 humidity 90 90 > th dose independent rect. 23 13
589 67.35 temperature 30 4320 < th dose independent rect. 13 19
624 67.38 wind 9 43200 < th dose independent rect. 18 3
632 67.38 wind 5 43200 > th dose dependent rect. 14 1
633 67.38 wind 9 43200 > th dose dependent rect. 18 3
654 67.40 humidity 90 43200 < th dose independent rect. 12 20
675 67.41 humidity 70 43200 > th dose dependent sin 20 NA
695 67.43 temperature 25 270 < th dose independent rect. 7 16
710 67.44 humidity 80 43200 > th dose independent rect. 10 14
714 67.44 humidity 90 43200 > th dose independent rect. 23 20
724 67.45 humidity 90 43200 > th dose independent sin 15 NA
725 67.45 atmosphere 1000 4320 < th dose independent rect. 19 1
726 67.45 radiation 1 4320 < th dose independent rect. 8 1
738 67.45 radiation 1 4320 < th dose dependent rect. 8 1
756 67.46 humidity 90 43200 > th dose independent rect. 23 18
771 67.47 radiation 40 1440 < th dose independent rect. 16 6
819 67.48 humidity 90 43200 > th dose dependent rect. 22 3
846 67.49 humidity 70 43200 > th dose dependent rect. 7 8
856 67.49 temperature 25 270 > th dose dependent rect. 9 19
868 67.50 humidity 90 43200 < th dose independent rect. 12 16
880 67.50 atmosphere 1000 4320 < th dose dependent rect. 10 13
886 67.50 temperature 25 270 > th dose dependent rect. 9 17
904 67.51 humidity 90 43200 < th dose independent rect. 13 14
924 67.51 atmosphere 1000 4320 < th dose dependent rect. 10 9
933 67.51 temperature 25 270 > th dose dependent rect. 7 21
935 67.51 temperature 25 270 > th dose dependent rect. 9 23
944 67.52 humidity 90 43200 < th dose independent rect. 24 15
947 67.52 temperature 30 4320 > th dose independent rect. 13 20
965 67.52 temperature 25 270 > th dose dependent rect. 7 19