FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0163900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF569 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0218) R2 : 2.57e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00498 (0.046) R2dN8 : 3.32e-05 R2N8 : 2.57e-05
σ : 0.411
deviance : 77.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.79 0.395 3.22 0.245 0.535 -0.387 -1.73 1.73 0.0543 11.2 0.1891 97 -- --
73.48 0.399 3.23 0.113 0.6 -0.422 0.116 -- 0.00598 11.4 0.1355 114 -- --
73.21 0.402 3.23 0.136 0.415 -0.237 -- 0.308 0.00755 9.94 0.1891 97 -- --
73.53 0.399 3.23 0.133 0.601 -0.435 -- -- 0.0226 11.5 0.13 106 -- --
76.77 0.41 3.24 0.12 -- 0.00873 -- 0.273 0.00935 -- 0.1891 97 -- --
75.14 0.406 3.24 0.114 0.199 -- -0.0969 -- 0.0044 7.41 -- -- -- --
75.17 0.406 3.24 0.112 0.198 -- -- -- 0.00476 7.57 -- -- -- --
76.89 0.41 3.24 0.121 -- 0.0607 -- -- 0.0126 -- 9.52 56 -- --
74.05 0.401 3.23 -- 0.593 -0.427 -- -- 0.0227 11.4 0.14 114 -- --
77.27 0.411 3.24 0.115 -- -- -- -- 0.00779 -- -- -- -- --
75.5 0.406 3.24 -- 0.199 -- -- -- -0.00774 7.53 -- -- -- --
77.27 0.411 3.24 -- -- 0.0578 -- -- -0.000988 -- 9.52 56 -- --
77.62 0.411 3.24 -- -- -- -- -- -0.00498 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.85 humidity 90.0 10 < th dose independent rect. 4 1
3 61.92 temperature 25.0 90 > th dose independent rect. 4 1
6 62.09 humidity 90.0 10 < th dose dependent rect. 4 1
8 62.20 temperature 25.0 90 > th dose dependent rect. 4 1
10 62.52 wind 1.0 30 > th dose dependent rect. 4 1
16 63.67 temperature 25.0 90 > th dose independent rect. 2 3
18 63.81 wind 1.0 30 > th dose independent rect. 4 1
19 64.19 temperature 25.0 10 > th dose independent rect. 2 3
27 64.61 atmosphere 1005.0 10 > th dose dependent rect. 4 1
29 64.73 temperature 25.0 10 > th dose dependent rect. 2 3
43 65.25 temperature 30.0 30 < th dose dependent rect. 4 1
44 65.27 wind 5.0 10 < th dose independent rect. 4 1
47 65.33 wind 9.0 10 < th dose dependent rect. 4 1
49 65.34 atmosphere 1005.0 10 > th dose independent rect. 4 1
51 65.38 humidity 80.0 10 > th dose independent rect. 4 1
54 65.39 temperature 10.0 10 > th dose independent rect. 4 1
56 65.39 temperature 30.0 10 < th dose independent rect. 4 1
57 65.39 humidity 50.0 10 > th dose independent rect. 4 1
60 65.39 atmosphere 995.0 10 > th dose independent rect. 4 1
61 65.39 atmosphere 1010.0 10 < th dose independent rect. 4 1
63 65.39 radiation 1.0 10 < th dose independent rect. 4 1
68 65.39 temperature 10.0 10 > th dose independent rect. 5 23
69 65.39 radiation 10.0 10 < th dose dependent rect. 4 1
74 65.41 precipitation 0.1 10 < th dose independent rect. 4 1
75 65.41 precipitation 0.1 10 < th dose dependent rect. 4 1
110 65.53 humidity 50.0 10 > th dose dependent rect. 4 1
115 65.56 temperature 10.0 10 > th dose dependent rect. 4 1
117 65.56 atmosphere 1015.0 30 < th dose dependent rect. 4 1
133 65.75 wind 7.0 1440 < th dose independent rect. 5 1
135 65.75 temperature 10.0 1440 > th dose independent rect. 5 1
138 65.75 temperature 30.0 1440 < th dose independent rect. 5 1
142 65.75 humidity 50.0 1440 > th dose independent rect. 5 1
151 65.75 atmosphere 995.0 1440 > th dose independent rect. 5 1
152 65.75 atmosphere 1015.0 1440 < th dose independent rect. 5 1
153 65.75 radiation 20.0 1440 < th dose independent rect. 5 1
162 65.75 temperature 10.0 1440 > th dose independent rect. 6 23
169 65.77 atmosphere 1000.0 30 > th dose independent rect. 5 23
182 66.18 precipitation 0.1 30 < th dose independent rect. 5 23
183 66.18 precipitation 0.1 30 < th dose dependent rect. 5 23
195 66.58 wind 9.0 30 < th dose independent rect. 5 23
199 66.69 temperature 25.0 270 > th dose dependent rect. 1 1
223 68.17 atmosphere 1005.0 270 > th dose dependent rect. 1 1
231 68.62 humidity 50.0 30 > th dose independent rect. 5 23
244 69.16 radiation 1.0 10 < th dose dependent rect. 4 10
252 69.34 radiation 1.0 10 < th dose independent rect. 4 10
264 69.46 humidity 90.0 270 < th dose independent rect. 1 1
265 69.47 radiation 1.0 10 < th dose dependent rect. 4 8
267 69.48 radiation 1.0 10 < th dose dependent rect. 4 4
281 69.65 radiation 1.0 10 < th dose independent rect. 4 8
283 69.67 radiation 1.0 10 < th dose independent rect. 4 4
329 70.19 humidity 90.0 270 < th dose independent rect. 1 4
347 70.33 temperature 30.0 30 < th dose independent rect. 5 23
372 70.53 humidity 80.0 14400 < th dose dependent rect. 3 6
385 70.63 temperature 10.0 30 > th dose dependent rect. 5 23
386 70.64 humidity 90.0 1440 > th dose independent rect. 2 3
400 70.70 radiation 1.0 30 < th dose dependent rect. 19 23
430 70.79 radiation 1.0 90 < th dose dependent rect. 6 23
451 70.86 radiation 1.0 30 < th dose dependent rect. 2 14
452 70.86 radiation 1.0 90 < th dose dependent rect. 1 23
472 70.91 humidity 90.0 1440 > th dose independent rect. 2 1
473 70.91 radiation 1.0 30 < th dose independent rect. 19 23
476 70.92 radiation 1.0 10 < th dose independent rect. 2 12
482 70.94 radiation 1.0 90 < th dose independent rect. 7 22
493 70.98 radiation 1.0 90 < th dose dependent rect. 11 18
496 70.98 radiation 1.0 90 < th dose dependent rect. 17 23
500 71.00 radiation 1.0 90 < th dose dependent no NA NA
501 71.00 radiation 1.0 30 < th dose dependent rect. 2 12
505 71.01 radiation 1.0 90 < th dose dependent rect. 9 23
506 71.01 radiation 1.0 90 < th dose dependent rect. 11 23
515 71.04 radiation 1.0 10 > th dose independent sin 3 NA
522 71.05 radiation 1.0 30 < th dose dependent sin 3 NA
528 71.06 wind 1.0 30 > th dose independent rect. 5 23
533 71.07 wind 5.0 14400 < th dose independent rect. 11 4
550 71.10 radiation 1.0 90 < th dose dependent rect. 15 23
553 71.12 radiation 1.0 10 < th dose independent rect. 2 4
558 71.13 radiation 1.0 10 < th dose independent sin 3 NA
567 71.15 radiation 1.0 90 > th dose independent rect. 16 23
570 71.16 wind 5.0 14400 > th dose independent rect. 11 4
575 71.17 radiation 1.0 10 < th dose independent rect. 2 10
589 71.20 radiation 1.0 10 < th dose independent rect. 2 6
596 71.21 temperature 10.0 30 > th dose dependent rect. 5 21
607 71.23 radiation 1.0 30 < th dose dependent rect. 2 10
615 71.25 radiation 1.0 30 < th dose dependent rect. 2 6
622 71.26 radiation 1.0 30 < th dose dependent rect. 2 4
673 71.33 humidity 70.0 14400 > th dose independent rect. 8 1
675 71.33 radiation 1.0 90 < th dose independent rect. 1 23
678 71.33 atmosphere 995.0 90 > th dose dependent rect. 5 6
679 71.33 humidity 80.0 14400 < th dose dependent rect. 21 13
684 71.35 wind 5.0 14400 < th dose independent rect. 11 1
705 71.38 atmosphere 995.0 30 > th dose dependent rect. 5 23
721 71.40 temperature 25.0 720 > th dose dependent rect. 5 3
725 71.41 wind 9.0 1440 < th dose independent rect. 3 3
726 71.41 temperature 10.0 1440 > th dose independent rect. 3 3
729 71.41 temperature 30.0 1440 < th dose independent rect. 3 3
733 71.41 humidity 50.0 1440 > th dose independent rect. 3 3
742 71.41 atmosphere 995.0 1440 > th dose independent rect. 3 3
743 71.41 radiation 20.0 1440 < th dose independent rect. 3 3
752 71.41 temperature 10.0 1440 > th dose independent rect. 6 21
763 71.42 atmosphere 1000.0 30 > th dose independent rect. 5 7
764 71.42 precipitation 0.1 4320 > th dose dependent rect. 20 1
776 71.45 temperature 30.0 720 < th dose independent rect. 17 12
781 71.45 atmosphere 995.0 30 > th dose dependent rect. 5 21
788 71.47 humidity 90.0 720 < th dose independent rect. 4 1
801 71.49 radiation 1.0 90 > th dose independent no NA NA
802 71.49 radiation 1.0 90 < th dose independent no NA NA
808 71.49 radiation 1.0 90 > th dose independent rect. 4 15
864 71.50 atmosphere 1000.0 90 > th dose independent rect. 5 14
865 71.50 radiation 1.0 90 < th dose independent rect. 11 23
867 71.50 radiation 1.0 90 < th dose independent rect. 17 23
877 71.51 atmosphere 995.0 30 > th dose dependent rect. 5 14
920 71.54 humidity 70.0 14400 > th dose independent rect. 6 3
923 71.54 humidity 70.0 14400 > th dose independent rect. 4 5
924 71.54 humidity 70.0 14400 > th dose independent rect. 1 8
939 71.55 humidity 70.0 14400 < th dose independent rect. 8 1
950 71.55 temperature 10.0 90 > th dose dependent rect. 5 6
993 71.60 radiation 1.0 90 < th dose independent rect. 15 23