Os08g0162700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0162700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.17 | 0.413 | 6.22 | 0.806 | 0.756 | 0.989 | 0.657 | -0.141 | 0.319 | 8.49 | 15.21 | 11 | -- | -- |
| 77.19 | 0.409 | 6.22 | 0.826 | 0.756 | 0.99 | 0.646 | -- | 0.324 | 8.47 | 15.2 | 11 | -- | -- |
| 78.48 | 0.413 | 6.22 | 0.871 | 0.753 | 0.963 | -- | 0.137 | 0.334 | 8.56 | 15.2 | 10 | -- | -- |
| 78.49 | 0.413 | 6.22 | 0.845 | 0.756 | 0.968 | -- | -- | 0.328 | 8.56 | 15.2 | 11 | -- | -- |
| 109.7 | 0.488 | 6.24 | 0.838 | -- | 1.13 | -- | 0.0492 | 0.32 | -- | 10.68 | 2 | -- | -- |
| 86.99 | 0.437 | 6.19 | 1.03 | 0.822 | -- | 0.507 | -- | 0.468 | 9.87 | -- | -- | -- | -- |
| 87.98 | 0.439 | 6.19 | 1.05 | 0.819 | -- | -- | -- | 0.469 | 9.91 | -- | -- | -- | -- |
| 109.7 | 0.488 | 6.24 | 0.831 | -- | 1.13 | -- | -- | 0.318 | -- | 9.633 | 2 | -- | -- |
| 95.77 | 0.456 | 6.25 | -- | 0.765 | 1.41 | -- | -- | 0.184 | 7.88 | 5.891 | 13 | -- | -- |
| 128.2 | 0.529 | 6.21 | 1.04 | -- | -- | -- | -- | 0.469 | -- | -- | -- | -- | -- |
| 116.8 | 0.506 | 6.21 | -- | 0.816 | -- | -- | -- | 0.353 | 9.81 | -- | -- | -- | -- |
| 126.87 | 0.525 | 6.27 | -- | -- | 1.39 | -- | -- | 0.196 | -- | 7.68 | 2 | -- | -- |
| 156.54 | 0.584 | 6.24 | -- | -- | -- | -- | -- | 0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 7 | 73.75 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 14 |
| 13 | 74.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 5 |
| 14 | 74.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 15 | 74.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 24 | 74.63 | temperature | 10 | 10 | > th | dose dependent | sin | 4 | NA |
| 26 | 74.64 | temperature | 30 | 10 | < th | dose dependent | sin | 5 | NA |
| 29 | 74.68 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 34 | 74.75 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 50 | 74.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 13 |
| 70 | 75.10 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 85 | 75.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 18 |
| 103 | 75.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 109 | 75.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 174 | 75.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 180 | 75.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 23 |
| 186 | 75.87 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 197 | 75.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 245 | 76.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 11 |
| 257 | 76.27 | temperature | 10 | 30 | > th | dose dependent | rect. | 4 | 23 |
| 290 | 76.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 309 | 76.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 318 | 76.56 | humidity | 80 | 90 | < th | dose dependent | rect. | 24 | 6 |
| 320 | 76.57 | humidity | 80 | 90 | < th | dose independent | rect. | 24 | 6 |
| 321 | 76.58 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 4 |
| 332 | 76.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 341 | 76.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 345 | 76.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 16 |
| 381 | 76.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 385 | 76.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 390 | 76.81 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 418 | 76.89 | humidity | 80 | 90 | < th | dose dependent | rect. | 24 | 3 |
| 425 | 76.91 | humidity | 80 | 90 | < th | dose independent | rect. | 1 | 2 |
| 510 | 77.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 528 | 77.19 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 535 | 77.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 543 | 77.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 552 | 77.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 567 | 77.28 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 587 | 77.33 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 592 | 77.34 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 607 | 77.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 630 | 77.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 633 | 77.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 752 | 77.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 754 | 77.67 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 838 | 77.82 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 861 | 77.85 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 14 |
| 878 | 77.86 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 923 | 77.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 16 |
| 940 | 77.96 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 953 | 77.98 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |