Os08g0162600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rubredoxin-type Fe(Cys)4 protein family protein.
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Os08g0162600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rubredoxin-type Fe(Cys)4 protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.35 | 0.432 | 14.6 | -0.708 | 0.495 | -0.682 | 1.05 | -0.352 | -0.479 | 8.51 | 69.76 | 888 | -- | -- |
| 84.16 | 0.427 | 14.6 | -0.751 | 0.502 | -0.703 | 0.923 | -- | -0.473 | 8.49 | 65 | 888 | -- | -- |
| 86.51 | 0.433 | 14.6 | -0.754 | 0.515 | -0.734 | -- | 0.519 | -0.482 | 8.77 | 65.96 | 890 | -- | -- |
| 86.85 | 0.434 | 14.6 | -0.718 | 0.485 | -0.693 | -- | -- | -0.478 | 8.71 | 66 | 907 | -- | -- |
| 92.03 | 0.447 | 14.6 | -0.642 | -- | -0.516 | -- | 0.0582 | -0.585 | -- | 67.03 | 7054 | -- | -- |
| 91.46 | 0.448 | 14.6 | -0.733 | 0.225 | -- | 0.91 | -- | -0.419 | 7.54 | -- | -- | -- | -- |
| 93.74 | 0.453 | 14.6 | -0.712 | 0.228 | -- | -- | -- | -0.421 | 7.2 | -- | -- | -- | -- |
| 90.23 | 0.442 | 14.6 | -0.7 | -- | -0.473 | -- | -- | -0.599 | -- | 65.27 | 18765 | -- | -- |
| 100.46 | 0.467 | 14.6 | -- | 0.459 | -0.657 | -- | -- | -0.41 | 8.93 | 66 | 914 | -- | -- |
| 96.49 | 0.459 | 14.6 | -0.708 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 107.1 | 0.484 | 14.6 | -- | 0.221 | -- | -- | -- | -0.342 | 7.41 | -- | -- | -- | -- |
| 101.42 | 0.469 | 14.6 | -- | -- | -0.679 | -- | -- | -0.494 | -- | 43.72 | 15920 | -- | -- |
| 109.7 | 0.489 | 14.6 | -- | -- | -- | -- | -- | -0.338 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.78 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 2 | 81.35 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 3 | 81.57 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 4 | 81.70 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 8 | 82.04 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 24 | 82.63 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 29 | 82.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 33 | 82.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 3 |
| 43 | 82.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 48 | 83.07 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 63 | 83.24 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 68 | 83.27 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 72 | 83.30 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 74 | 83.32 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 77 | 83.37 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 78 | 83.37 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 79 | 83.37 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 80 | 83.38 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 81 | 83.38 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 94 | 83.48 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 96 | 83.49 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 100 | 83.52 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 102 | 83.53 | wind | 3.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 106 | 83.55 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 115 | 83.58 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 125 | 83.62 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 127 | 83.63 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 133 | 83.66 | wind | 3.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 140 | 83.69 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 141 | 83.69 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 148 | 83.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 157 | 83.72 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 161 | 83.73 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 165 | 83.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 168 | 83.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 170 | 83.74 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 18 |
| 173 | 83.75 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 177 | 83.75 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 186 | 83.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 208 | 83.86 | wind | 3.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 228 | 83.90 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 237 | 83.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 249 | 83.95 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 254 | 83.96 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 261 | 83.97 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 18 |
| 296 | 84.03 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 315 | 84.05 | wind | 3.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 335 | 84.07 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 337 | 84.07 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 338 | 84.08 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 339 | 84.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 340 | 84.08 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 346 | 84.08 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 350 | 84.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 355 | 84.10 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 369 | 84.11 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 11 |
| 384 | 84.13 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 386 | 84.13 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 388 | 84.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 402 | 84.15 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 405 | 84.15 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 409 | 84.15 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 410 | 84.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 413 | 84.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 415 | 84.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 426 | 84.17 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 430 | 84.18 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 443 | 84.19 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 446 | 84.19 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 482 | 84.22 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 14 |
| 488 | 84.24 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 489 | 84.24 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 4 |
| 496 | 84.24 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 12 |
| 506 | 84.25 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 519 | 84.26 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 23 | 18 |
| 521 | 84.27 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 542 | 84.28 | wind | 3.0 | 43200 | < th | dose independent | rect. | 22 | 15 |
| 544 | 84.28 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 545 | 84.28 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 550 | 84.28 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 567 | 84.29 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 22 |
| 574 | 84.30 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 599 | 84.32 | wind | 3.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 613 | 84.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 647 | 84.36 | humidity | 80.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 669 | 84.38 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 677 | 84.39 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 767 | 84.46 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 790 | 84.48 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 791 | 84.48 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 845 | 84.52 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 21 |
| 934 | 84.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 19 |
| 941 | 84.58 | humidity | 70.0 | 720 | > th | dose independent | rect. | 12 | 20 |
| 954 | 84.59 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 10 |
| 962 | 84.60 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 969 | 84.61 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 985 | 84.61 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 10 |