Os08g0162300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0162300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 209.91 | 0.681 | 3.9 | -1.46 | 0.994 | 0.0735 | -2.19 | -3.52 | -0.134 | 12.2 | 67.09 | 1639 | -- | -- |
| 219.98 | 0.691 | 3.82 | -1.26 | 1.06 | -1.04 | -2.49 | -- | 0.0659 | 12.5 | 81.01 | 2970 | -- | -- |
| 222.72 | 0.7 | 3.86 | -1.35 | 0.875 | 0.217 | -- | -2.83 | -0.0895 | 12.1 | 67.09 | 1660 | -- | -- |
| 245.01 | 0.729 | 3.81 | -1.34 | 1.1 | -0.835 | -- | -- | 0.0615 | 11.9 | 83.01 | 2968 | -- | -- |
| 258.26 | 0.753 | 3.87 | -1.37 | -- | 0.632 | -- | -3.03 | -0.089 | -- | 67.09 | 1660 | -- | -- |
| 233.03 | 0.716 | 3.86 | -1.19 | 1.03 | -- | -2.39 | -- | -0.0834 | 12.4 | -- | -- | -- | -- |
| 257.18 | 0.751 | 3.86 | -1.29 | 1.04 | -- | -- | -- | -0.0968 | 12.1 | -- | -- | -- | -- |
| 290.03 | 0.797 | 3.87 | -1.35 | -- | 0.616 | -- | -- | -0.0645 | -- | 71 | 2413 | -- | -- |
| 291.7 | 0.795 | 3.77 | -- | 1 | -0.866 | -- | -- | 0.34 | 11.9 | 76.95 | 4200 | -- | -- |
| 325.48 | 0.843 | 3.88 | -1.32 | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
| 300.77 | 0.811 | 3.83 | -- | 1.06 | -- | -- | -- | 0.0464 | 12.2 | -- | -- | -- | -- |
| 338.14 | 0.859 | 3.84 | -- | -- | 0.597 | -- | -- | 0.0838 | -- | 71 | 2413 | -- | -- |
| 371.4 | 0.9 | 3.85 | -- | -- | -- | -- | -- | 0.0343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.67 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 2 | 200.36 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 3 | 201.34 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 9 | 205.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 11 | 205.51 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 27 | 206.85 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 39 | 207.47 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 40 | 207.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 50 | 207.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 51 | 207.90 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 57 | 208.07 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 60 | 208.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 64 | 208.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 68 | 208.24 | humidity | 60 | 1440 | > th | dose dependent | rect. | 4 | 10 |
| 88 | 208.66 | humidity | 50 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 105 | 208.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 124 | 209.35 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 8 |
| 126 | 209.40 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 133 | 209.53 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 1 |
| 164 | 209.90 | wind | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 165 | 209.91 | humidity | 60 | 30 | > th | dose independent | rect. | 5 | 23 |
| 199 | 210.38 | wind | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 200 | 210.38 | humidity | 50 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 206 | 210.44 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 211 | 210.47 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 6 |
| 224 | 210.66 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 234 | 210.76 | humidity | 90 | 1440 | < th | dose dependent | rect. | 4 | 9 |
| 243 | 210.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 250 | 210.93 | humidity | 70 | 270 | < th | dose independent | rect. | 11 | 2 |
| 256 | 211.00 | humidity | 60 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 266 | 211.05 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 273 | 211.08 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 275 | 211.09 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 285 | 211.15 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 294 | 211.25 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 304 | 211.30 | humidity | 80 | 270 | < th | dose independent | rect. | 21 | 17 |
| 327 | 211.40 | humidity | 60 | 1440 | > th | dose dependent | sin | 4 | NA |
| 368 | 211.59 | humidity | 90 | 30 | < th | dose dependent | rect. | 11 | 5 |
| 372 | 211.62 | humidity | 80 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 395 | 211.67 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 396 | 211.67 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 413 | 211.71 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 414 | 211.71 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 426 | 211.76 | humidity | 70 | 1440 | < th | dose independent | sin | 2 | NA |
| 449 | 211.84 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 454 | 211.86 | humidity | 80 | 270 | > th | dose independent | sin | 3 | NA |
| 479 | 211.93 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 11 |
| 516 | 212.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 538 | 212.09 | humidity | 90 | 1440 | < th | dose dependent | sin | 5 | NA |
| 563 | 212.14 | humidity | 80 | 270 | > th | dose dependent | sin | 2 | NA |
| 567 | 212.15 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 578 | 212.19 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 585 | 212.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 588 | 212.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 602 | 212.26 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 606 | 212.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 612 | 212.29 | humidity | 80 | 270 | > th | dose independent | rect. | 5 | 9 |
| 620 | 212.32 | humidity | 80 | 270 | < th | dose independent | rect. | 3 | 11 |
| 635 | 212.33 | humidity | 80 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 669 | 212.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 691 | 212.44 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 804 | 212.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 817 | 212.55 | humidity | 90 | 270 | < th | dose dependent | rect. | 20 | 20 |
| 831 | 212.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 833 | 212.62 | humidity | 60 | 90 | > th | dose independent | rect. | 5 | 16 |
| 844 | 212.65 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 865 | 212.67 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 884 | 212.68 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 18 |
| 912 | 212.73 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 916 | 212.73 | humidity | 90 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 922 | 212.76 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 1 |
| 972 | 212.88 | humidity | 70 | 90 | < th | dose independent | rect. | 8 | 12 |