Os08g0161700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0161700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.29 | 0.171 | 12.8 | -0.217 | 0.116 | 0.271 | 0.0518 | 0.531 | 0.0988 | 4.81 | 25.67 | 4404 | -- | -- |
| 13.39 | 0.17 | 12.8 | -0.324 | 0.115 | 0.308 | 0.0372 | -- | 0.0722 | 4.79 | 25.95 | 4362 | -- | -- |
| 13.29 | 0.17 | 12.8 | -0.216 | 0.116 | 0.27 | -- | 0.534 | 0.0992 | 4.72 | 25.7 | 4399 | -- | -- |
| 13.37 | 0.17 | 12.8 | -0.343 | 0.114 | 0.324 | -- | -- | 0.0688 | 4.82 | 25.56 | 4358 | -- | -- |
| 13.96 | 0.174 | 12.8 | -0.209 | -- | 0.272 | -- | 0.555 | 0.105 | -- | 25.9 | 4271 | -- | -- |
| 16.61 | 0.191 | 12.8 | -0.236 | 0.129 | -- | 0.0684 | -- | 0.0803 | 4.42 | -- | -- | -- | -- |
| 16.62 | 0.191 | 12.8 | -0.237 | 0.13 | -- | -- | -- | 0.08 | 4.32 | -- | -- | -- | -- |
| 14.04 | 0.174 | 12.8 | -0.343 | -- | 0.338 | -- | -- | 0.0753 | -- | 25.6 | 4255 | -- | -- |
| 16.15 | 0.187 | 12.8 | -- | 0.109 | 0.24 | -- | -- | 0.119 | 4.66 | 26.32 | 4280 | -- | -- |
| 17.52 | 0.196 | 12.8 | -0.232 | -- | -- | -- | -- | 0.0834 | -- | -- | -- | -- | -- |
| 18.1 | 0.199 | 12.8 | -- | 0.125 | -- | -- | -- | 0.106 | 4.36 | -- | -- | -- | -- |
| 16.77 | 0.191 | 12.8 | -- | -- | 0.249 | -- | -- | 0.121 | -- | 26.6 | 4201 | -- | -- |
| 18.94 | 0.203 | 12.8 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 3 | 13.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 4 | 13.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 5 | 13.03 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 23 | 13.07 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 24 | 13.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 25 | 13.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 31 | 13.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 40 | 13.12 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 55 | 13.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 56 | 13.13 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 57 | 13.15 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 68 | 13.16 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 89 | 13.16 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 91 | 13.17 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 107 | 13.17 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 19 |
| 119 | 13.18 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 5 |
| 159 | 13.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 201 | 13.21 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 246 | 13.23 | temperature | 30 | 4320 | > th | dose dependent | sin | 7 | NA |
| 252 | 13.24 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 265 | 13.25 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 268 | 13.25 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 308 | 13.26 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 334 | 13.27 | temperature | 25 | 4320 | > th | dose dependent | sin | 2 | NA |
| 370 | 13.28 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 494 | 13.32 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 528 | 13.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 563 | 13.33 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 591 | 13.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 19 |
| 602 | 13.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 22 |
| 629 | 13.34 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 658 | 13.34 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 18 |
| 700 | 13.35 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 715 | 13.35 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 15 |
| 836 | 13.38 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 838 | 13.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 839 | 13.38 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 967 | 13.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 7 |