Os08g0160500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellulose synthase family protein.
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Os08g0160500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellulose synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 535.48 | 1.09 | 9.21 | -4.62 | 1.69 | 3.44 | -0.568 | -3.47 | -0.928 | 9.94 | 26.53 | 1085 | 9.25 | -- |
| 537.42 | 1.08 | 9.13 | -3.94 | 1.66 | 3.1 | -0.448 | -- | -0.805 | 9.92 | 26.53 | 1080 | 8.8 | -- |
| 536.56 | 1.08 | 9.21 | -4.62 | 1.69 | 3.42 | -- | -3.32 | -0.93 | 9.88 | 26.55 | 1097 | 9.25 | -- |
| 538.21 | 1.08 | 9.13 | -3.96 | 1.67 | 3.08 | -- | -- | -0.801 | 9.91 | 26.54 | 1083 | 8.91 | -- |
| 673.75 | 1.21 | 9.21 | -4.16 | -- | 3.03 | -- | -1.62 | -0.805 | -- | 26.7 | 1251 | 8.25 | -- |
| 883.57 | 1.39 | 9.15 | -3.17 | 1.49 | -- | -0.149 | -- | -0.905 | 8.14 | -- | -- | -- | -- |
| 883.63 | 1.39 | 9.15 | -3.17 | 1.49 | -- | -- | -- | -0.905 | 8.11 | -- | -- | -- | -- |
| 674.09 | 1.21 | 9.16 | -3.93 | -- | 2.87 | -- | -- | -0.753 | -- | 26.7 | 1234 | 7.69 | -- |
| 926.82 | 1.42 | 8.97 | -- | 1.58 | 2.34 | -- | -- | -0.137 | 9.41 | 28.47 | 1093 | 7.67 | -- |
| 1006.05 | 1.48 | 9.19 | -3.16 | -- | -- | -- | -- | -0.887 | -- | -- | -- | -- | -- |
| 1149.25 | 1.59 | 9.07 | -- | 1.48 | -- | -- | -- | -0.552 | 8.27 | -- | -- | -- | -- |
| 1060.78 | 1.52 | 9.05 | -- | -- | 2.24 | -- | -- | -0.252 | -- | 27.44 | 1221 | 6.73 | -- |
| 1269.74 | 1.66 | 9.11 | -- | -- | -- | -- | -- | -0.536 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 573.32 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 4 | 578.40 | temperature | 30 | 1440 | > th | dose dependent | sin | 14 | NA |
| 8 | 578.99 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 44 | 580.45 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 47 | 580.75 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 63 | 581.12 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 121 | 582.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 126 | 582.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 127 | 582.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 144 | 582.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 176 | 583.45 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 179 | 583.71 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 308 | 585.19 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 313 | 585.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 319 | 586.30 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 336 | 586.46 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 348 | 587.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 362 | 587.43 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 394 | 587.92 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 397 | 588.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 400 | 588.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 401 | 588.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 406 | 588.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 428 | 589.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 442 | 589.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 447 | 589.73 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 481 | 590.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 519 | 590.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 532 | 590.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 534 | 590.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 546 | 590.59 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 560 | 590.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 562 | 590.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 646 | 590.93 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 650 | 591.11 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 667 | 591.16 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 716 | 591.86 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 722 | 592.05 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 771 | 593.04 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 870 | 593.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 885 | 593.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 909 | 594.10 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 949 | 595.06 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |