Os08g0153600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0153600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.78 | 0.338 | 7.91 | 1.68 | 1.19 | 0.93 | 0.388 | 0.498 | 0.0781 | 15.1 | 24.15 | 89 | -- | -- |
| 52.1 | 0.336 | 7.9 | 1.74 | 1.17 | 0.882 | 0.219 | -- | 0.0954 | 15.1 | 24.21 | 89 | -- | -- |
| 52.11 | 0.336 | 7.9 | 1.72 | 1.18 | 0.897 | -- | 0.227 | 0.083 | 15.1 | 24.1 | 64 | -- | -- |
| 52.18 | 0.336 | 7.9 | 1.75 | 1.18 | 0.882 | -- | -- | 0.0939 | 15.1 | 24.2 | 61 | -- | -- |
| 109.78 | 0.488 | 7.88 | 1.93 | -- | 0.998 | -- | -0.638 | 0.13 | -- | 50.72 | 1144 | -- | -- |
| 62.62 | 0.371 | 7.93 | 1.54 | 1.06 | -- | 0.249 | -- | -0.0531 | 15.3 | -- | -- | -- | -- |
| 62.82 | 0.371 | 7.93 | 1.54 | 1.06 | -- | -- | -- | -0.0517 | 15.3 | -- | -- | -- | -- |
| 110.13 | 0.489 | 7.89 | 1.79 | -- | 0.994 | -- | -- | 0.102 | -- | 35.1 | 1142 | -- | -- |
| 125.12 | 0.524 | 7.97 | -- | 1.06 | 0.185 | -- | -- | -0.197 | 15.3 | 24.2 | 61 | -- | -- |
| 126.66 | 0.526 | 7.93 | 1.5 | -- | -- | -- | -- | -0.0797 | -- | -- | -- | -- | -- |
| 125.67 | 0.524 | 7.97 | -- | 1.03 | -- | -- | -- | -0.224 | 15.3 | -- | -- | -- | -- |
| 166.54 | 0.601 | 8 | -- | -- | -1.14 | -- | -- | -0.375 | -- | 35.7 | 27 | -- | -- |
| 185.94 | 0.636 | 7.97 | -- | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 3 | 50.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 4 | 50.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 7 | 50.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 12 | 50.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 12 |
| 16 | 50.44 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 19 |
| 28 | 50.63 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 20 |
| 31 | 50.66 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 60 | 50.82 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 145 | 51.27 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 167 | 51.38 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 190 | 51.47 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 4 |
| 209 | 51.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 263 | 51.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 293 | 51.87 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 302 | 51.90 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 303 | 51.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 325 | 51.97 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 411 | 52.16 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 421 | 52.19 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 429 | 52.21 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 1 |
| 459 | 52.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 499 | 52.37 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 500 | 52.37 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 527 | 52.40 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 560 | 52.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 578 | 52.50 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 614 | 52.55 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 616 | 52.56 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 654 | 52.63 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 705 | 52.70 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 731 | 52.74 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 780 | 52.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 829 | 52.87 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 848 | 52.89 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 856 | 52.90 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 13 | NA |
| 858 | 52.90 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 13 | NA |
| 861 | 52.90 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 954 | 53.00 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 960 | 53.01 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 8 |
| 967 | 53.01 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 21 |