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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0149000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase, trypsin-like serine and cysteine domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0345) R2 : 0.00355
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0927 (0.0727) R2dN8 : 0.00459 R2N8 : 0.00355
σ : 0.65
deviance : 193.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.59 0.637 2.97 -0.495 0.155 -0.532 -0.842 2.04 0.0408 3.87 30 9 -- --
184.47 0.633 2.95 -0.327 0.181 -0.377 -0.724 -- 0.0491 3.83 29.69 5 -- --
185.39 0.639 2.96 -0.41 0.167 -0.481 -- 1.05 0.0542 2.74 30 9 -- --
185.82 0.635 2.95 -0.325 0.191 -0.41 -- -- 0.0563 2.8 29.68 6 -- --
186.78 0.64 2.96 -0.391 -- -0.408 -- 1.03 0.0572 -- 30 9 -- --
189.68 0.646 2.95 -0.264 0.0374 -- -0.963 -- 0.0583 4.69 -- -- -- --
192.1 0.649 2.95 -0.259 0.0359 -- -- -- 0.0632 2.43 -- -- -- --
187.38 0.64 2.94 -0.3 -- -0.333 -- -- 0.072 -- 30 9 -- --
188.52 0.639 2.94 -- 0.172 -0.374 -- -- 0.0928 2.75 29.6 6 -- --
192.18 0.648 2.95 -0.258 -- -- -- -- 0.0641 -- -- -- -- --
193.87 0.651 2.94 -- 0.0309 -- -- -- 0.0921 2.29 -- -- -- --
189.73 0.644 2.94 -- -- -0.31 -- -- 0.104 -- 29.95 8 -- --
193.93 0.65 2.94 -- -- -- -- -- 0.0927 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.73 precipitation 0.1 270 > th dose independent rect. 20 1
2 176.73 precipitation 0.1 270 > th dose dependent rect. 20 1
3 177.02 temperature 30.0 10 < th dose independent rect. 7 23
4 177.29 precipitation 0.1 10 > th dose independent rect. 22 2
6 177.29 precipitation 0.1 10 > th dose dependent rect. 22 2
10 177.45 temperature 20.0 270 < th dose dependent rect. 2 1
16 177.55 precipitation 0.1 270 > th dose independent rect. 18 4
17 177.56 precipitation 0.1 270 > th dose dependent rect. 18 4
28 178.03 humidity 90.0 270 > th dose independent rect. 3 1
29 178.12 temperature 20.0 10 < th dose dependent rect. 3 3
30 178.17 temperature 20.0 10 < th dose dependent rect. 4 1
37 178.37 temperature 30.0 10 < th dose independent rect. 7 20
157 180.02 humidity 80.0 270 > th dose dependent rect. 3 1
162 180.16 temperature 30.0 10 < th dose independent rect. 4 23
182 180.45 wind 1.0 270 > th dose dependent rect. 3 1
193 180.63 precipitation 0.1 270 > th dose independent rect. 10 12
195 180.75 temperature 30.0 10 > th dose independent rect. 13 22
196 180.76 wind 3.0 270 > th dose independent rect. 3 1
203 180.79 wind 7.0 270 > th dose dependent rect. 20 2
206 180.88 wind 5.0 30 > th dose dependent rect. 21 6
208 180.91 atmosphere 1015.0 30 < th dose independent rect. 7 20
214 181.01 wind 7.0 270 > th dose independent rect. 21 1
217 181.06 wind 1.0 30 > th dose independent rect. 3 4
237 181.23 atmosphere 1005.0 90 < th dose independent rect. 2 3
257 181.35 temperature 20.0 90 < th dose independent rect. 2 1
266 181.40 wind 1.0 90 > th dose dependent rect. 3 4
267 181.41 atmosphere 1005.0 10 < th dose independent rect. 3 1
287 181.49 temperature 20.0 10 < th dose independent rect. 3 1
291 181.55 atmosphere 1015.0 10 < th dose independent rect. 7 23
295 181.59 precipitation 0.1 270 > th dose independent sin 18 NA
296 181.59 temperature 30.0 10 > th dose independent rect. 13 6
319 181.64 atmosphere 1005.0 90 > th dose independent rect. 7 22
331 181.73 temperature 30.0 10 < th dose independent rect. 7 10
333 181.75 humidity 90.0 30 < th dose independent rect. 2 5
358 181.82 radiation 10.0 10 < th dose independent rect. 3 4
377 181.98 atmosphere 1005.0 90 < th dose independent rect. 11 18
387 182.04 wind 7.0 30 > th dose independent rect. 20 7
399 182.08 wind 7.0 30 > th dose independent rect. 20 12
446 182.13 radiation 10.0 10 < th dose dependent rect. 6 1
468 182.22 humidity 80.0 10 > th dose dependent rect. 6 1
481 182.25 temperature 30.0 10 < th dose independent rect. 7 14
487 182.27 precipitation 0.1 270 > th dose independent rect. 1 1
489 182.27 precipitation 0.1 270 > th dose dependent rect. 1 1
505 182.33 temperature 30.0 10 > th dose independent sin 16 NA
558 182.47 humidity 80.0 270 > th dose dependent rect. 23 6
570 182.53 wind 1.0 90 < th dose dependent rect. 13 1
571 182.54 temperature 20.0 10 < th dose dependent rect. 24 6
573 182.55 temperature 30.0 10 > th dose independent rect. 14 1
575 182.56 atmosphere 1005.0 30 > th dose independent rect. 7 20
578 182.58 humidity 90.0 30 > th dose independent rect. 3 1
580 182.58 temperature 30.0 10 < th dose dependent rect. 6 1
583 182.59 temperature 20.0 720 < th dose independent rect. 18 1
585 182.59 atmosphere 1005.0 90 < th dose independent rect. 13 16
592 182.60 wind 3.0 30 < th dose dependent rect. 6 1
605 182.63 temperature 20.0 720 < th dose dependent rect. 17 1
606 182.63 atmosphere 1005.0 30 > th dose dependent rect. 6 1
621 182.65 wind 7.0 270 > th dose dependent rect. 14 1
622 182.66 humidity 90.0 720 > th dose independent rect. 14 7
626 182.67 humidity 90.0 720 < th dose independent rect. 13 6
632 182.69 humidity 90.0 720 < th dose independent rect. 13 8
633 182.70 atmosphere 1005.0 90 < th dose independent sin 17 NA
652 182.73 temperature 30.0 10 < th dose independent sin 17 NA
653 182.73 humidity 80.0 10 > th dose independent rect. 3 4
687 182.77 atmosphere 1005.0 90 > th dose independent rect. 7 18
720 182.79 wind 1.0 30 < th dose dependent rect. 11 3
729 182.83 precipitation 0.1 270 < th dose independent sin 19 NA
733 182.83 precipitation 0.1 270 < th dose dependent sin 19 NA
736 182.84 radiation 1.0 30 > th dose independent rect. 7 23
761 182.90 radiation 1.0 30 > th dose dependent rect. 6 1
784 182.97 precipitation 0.1 10 < th dose independent rect. 7 23
786 182.97 precipitation 0.1 10 < th dose dependent rect. 7 23
793 182.99 radiation 10.0 10 > th dose independent rect. 17 14
794 183.00 atmosphere 1005.0 90 > th dose independent sin 18 NA
806 183.00 wind 1.0 30 > th dose independent rect. 12 19
807 183.00 atmosphere 1015.0 270 < th dose independent rect. 4 22
841 183.03 radiation 10.0 10 > th dose dependent rect. 17 14
843 183.04 humidity 90.0 720 > th dose independent rect. 14 3
874 183.07 atmosphere 1005.0 90 < th dose independent rect. 14 12
877 183.09 wind 9.0 1440 < th dose independent rect. 4 4
878 183.09 temperature 10.0 1440 > th dose independent rect. 4 4
882 183.09 temperature 30.0 1440 < th dose independent rect. 4 4
886 183.09 humidity 50.0 1440 > th dose independent rect. 4 4
891 183.09 atmosphere 995.0 1440 > th dose independent rect. 4 4
892 183.09 atmosphere 1015.0 1440 < th dose independent rect. 4 4
894 183.09 temperature 10.0 1440 > th dose independent rect. 8 20
908 183.14 wind 7.0 270 > th dose independent rect. 14 1
911 183.15 humidity 90.0 720 < th dose independent rect. 18 1
917 183.16 temperature 15.0 30 > th dose independent rect. 7 20
920 183.17 wind 1.0 90 < th dose independent rect. 13 1
932 183.18 precipitation 0.1 270 > th dose dependent rect. 10 14
978 183.26 wind 3.0 30 < th dose independent rect. 6 1
986 183.27 temperature 20.0 720 > th dose independent rect. 18 1
990 183.27 atmosphere 1015.0 30 < th dose independent rect. 4 23
995 183.29 humidity 80.0 10 > th dose independent rect. 6 1
1000 183.30 wind 9.0 30 < th dose independent rect. 3 4