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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0148300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor protein kinase CLAVATA1 precursor (EC 2.7.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.0511) R2 : 0.469
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.05 (0.134) R2dC : 0.0719 R2C : 0.0994
β3 : 2.63 (0.148) R2dE : 0.37 R2E : 0.397
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0268 (0.107) R2dN8 : 7.65e-05 R2N8 : -0.000451
σ : 0.959
deviance : 423.83
__
_____
C
peak time of C : 6.77
E
wheather : temperature
threshold : 25.42
memory length : 5421
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
423.78 0.967 3.77 0.273 1.04 2.61 -0.0211 1.19 -0.0202 6.81 24.48 5386 6.94 --
424.1 0.959 3.79 -0.0163 1.04 2.72 -0.0411 -- -0.0384 6.8 24.75 5394 6.87 --
423.77 0.959 3.76 0.281 1.04 2.61 -- 1.21 -0.0117 6.81 24.54 5390 6.98 --
423.88 0.959 3.78 -0.0157 1.03 2.65 -- -- 0.0109 6.81 25.31 5411 6.83 --
478.55 1.02 3.8 0.388 -- 2.68 -- 1.7 -0.106 -- 23.62 5347 6.98 --
695.45 1.24 3.77 0.785 1.28 -- 0.222 -- 0.0565 5.93 -- -- -- --
695.57 1.24 3.77 0.787 1.28 -- -- -- 0.0556 5.93 -- -- -- --
478.98 1.02 3.84 -0.0906 -- 2.85 -- -- -0.188 -- 23.82 5353 6.81 --
423.83 0.959 3.78 -- 1.05 2.63 -- -- 0.0268 6.77 25.42 5421 6.9 --
780.93 1.31 3.79 0.826 -- -- -- -- 0.0851 -- -- -- -- --
711.91 1.25 3.79 -- 1.3 -- -- -- -0.0321 5.9 -- -- -- --
478.91 1.02 3.85 -- -- 2.83 -- -- -0.196 -- 23.7 5333 6.67 --
798.91 1.32 3.81 -- -- -- -- -- -0.00645 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 440.28 temperature 25 1440 > th dose dependent rect. 18 1
2 441.53 temperature 25 4320 < th dose independent rect. 6 2
3 443.42 temperature 25 4320 > th dose independent rect. 6 2
6 445.15 temperature 25 14400 > th dose dependent rect. 18 2
39 451.12 temperature 30 1440 < th dose independent rect. 12 1
40 451.16 temperature 25 1440 > th dose dependent rect. 17 17
49 452.00 temperature 25 14400 > th dose independent rect. 19 4
51 452.11 temperature 25 14400 < th dose independent rect. 19 4
68 452.89 temperature 30 1440 > th dose independent rect. 12 1
76 453.09 temperature 25 1440 > th dose dependent rect. 16 21
87 453.48 temperature 30 1440 < th dose independent rect. 16 1
109 453.98 temperature 30 1440 < th dose independent rect. 9 9
120 454.28 temperature 30 1440 > th dose independent rect. 16 1
123 454.31 temperature 30 1440 < th dose independent rect. 9 4
132 454.53 temperature 25 1440 > th dose dependent rect. 2 7
146 454.92 temperature 30 1440 < th dose independent rect. 9 15
147 454.92 temperature 30 1440 < th dose independent rect. 9 19
149 454.93 temperature 30 1440 < th dose independent rect. 9 21
157 454.97 temperature 30 1440 < th dose independent rect. 9 13
161 454.99 temperature 30 1440 < th dose independent rect. 16 21
171 455.15 temperature 30 14400 < th dose independent rect. 15 18
174 455.22 temperature 30 14400 < th dose independent rect. 15 12
177 455.24 temperature 30 14400 < th dose independent rect. 15 4
179 455.24 temperature 30 1440 < th dose independent rect. 21 21
180 455.25 temperature 30 14400 < th dose independent rect. 15 9
185 455.26 temperature 30 14400 < th dose independent rect. 15 16
190 455.27 temperature 30 1440 < th dose independent rect. 2 16
192 455.27 temperature 30 1440 < th dose independent rect. 23 19
200 455.29 temperature 30 1440 < th dose independent sin 23 NA
205 455.30 temperature 30 1440 > th dose independent rect. 9 4
207 455.30 temperature 30 1440 > th dose dependent rect. 12 2
211 455.31 temperature 30 1440 < th dose independent rect. 6 12
228 455.49 temperature 30 1440 > th dose independent rect. 9 9
236 455.60 temperature 30 14400 > th dose independent rect. 15 18
237 455.62 temperature 30 14400 > th dose independent rect. 15 4
300 455.94 temperature 30 1440 > th dose independent rect. 16 22
301 455.95 temperature 30 14400 < th dose independent sin 12 NA
326 456.11 temperature 30 14400 > th dose independent sin 13 NA
330 456.12 temperature 30 1440 < th dose independent rect. 2 22
341 456.16 temperature 30 1440 < th dose independent rect. 5 19
344 456.16 temperature 30 1440 < th dose independent rect. 6 22
360 456.18 temperature 30 1440 < th dose independent no NA NA
451 456.44 temperature 30 1440 < th dose independent rect. 12 23
454 456.46 temperature 30 1440 < th dose independent rect. 18 19
489 456.60 temperature 25 4320 > th dose dependent sin 12 NA
495 456.65 temperature 30 1440 < th dose independent rect. 2 11
500 456.71 temperature 30 1440 < th dose independent rect. 23 14
503 456.75 temperature 30 1440 > th dose independent sin 22 NA
505 456.75 temperature 30 1440 < th dose independent rect. 20 17
543 456.91 temperature 25 1440 > th dose dependent rect. 12 23
586 457.14 temperature 25 1440 > th dose dependent rect. 23 22
632 457.47 temperature 30 1440 > th dose independent no NA NA
773 457.66 temperature 25 1440 > th dose dependent no NA NA
779 457.68 temperature 25 1440 > th dose dependent rect. 6 23
918 458.25 temperature 30 14400 < th dose independent rect. 16 1
966 458.66 temperature 25 1440 > th dose dependent rect. 7 2