Os08g0148200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0148200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.4 | 0.584 | 10.5 | 0.323 | 2.33 | -1.59 | 1.51 | 0.205 | -0.265 | 4.08 | 21.5 | 3891 | -- | -- |
| 154.48 | 0.579 | 10.5 | 0.268 | 2.33 | -1.61 | 1.53 | -- | -0.268 | 4.08 | 21.57 | 3878 | -- | -- |
| 160.85 | 0.591 | 10.5 | 0.337 | 2.32 | -1.58 | -- | 0.303 | -0.265 | 4.07 | 21.55 | 3870 | -- | -- |
| 159.07 | 0.587 | 10.5 | 0.0957 | 2.35 | -1.59 | -- | -- | -0.345 | 4.01 | 21.4 | 2589 | -- | -- |
| 330.69 | 0.852 | 10.5 | -0.486 | -- | -1.33 | -- | -0.509 | -0.198 | -- | 25.3 | 1794 | -- | -- |
| 220.61 | 0.696 | 10.6 | -0.678 | 2.27 | -- | 1.64 | -- | -0.827 | 4.2 | -- | -- | -- | -- |
| 228.02 | 0.707 | 10.7 | -0.696 | 2.27 | -- | -- | -- | -0.836 | 4.13 | -- | -- | -- | -- |
| 331.93 | 0.852 | 10.5 | -0.348 | -- | -1.34 | -- | -- | -0.155 | -- | 25.3 | 1794 | -- | -- |
| 159.3 | 0.588 | 10.5 | -- | 2.36 | -1.55 | -- | -- | -0.366 | 4 | 21.46 | 2588 | -- | -- |
| 508.6 | 1.05 | 10.7 | -0.604 | -- | -- | -- | -- | -0.776 | -- | -- | -- | -- | -- |
| 240.78 | 0.726 | 10.6 | -- | 2.26 | -- | -- | -- | -0.759 | 4.14 | -- | -- | -- | -- |
| 260.55 | 0.752 | 10.5 | -- | -- | -1.72 | -- | -- | -0.192 | -- | 25.7 | 137 | -- | -- |
| 518.22 | 1.06 | 10.7 | -- | -- | -- | -- | -- | -0.709 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 2 | 142.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 53 | 151.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 56 | 151.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 135 | 153.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 192 | 154.88 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 203 | 155.09 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 209 | 155.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 256 | 155.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 270 | 155.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 331 | 156.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 388 | 156.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 402 | 156.94 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 438 | 157.22 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 471 | 157.47 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 845 | 159.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 880 | 160.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 920 | 160.29 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 947 | 160.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |