Os08g0144400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os08g0144400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.19 | 0.365 | 7.51 | -0.0768 | 0.307 | -0.733 | 1.1 | -0.642 | 0.181 | 15 | 79 | 1258 | -- | -- |
| 60.55 | 0.362 | 7.5 | -0.0254 | 0.304 | -0.763 | 1.19 | -- | 0.192 | 15 | 78.82 | 1244 | -- | -- |
| 63.84 | 0.372 | 7.52 | -0.122 | 0.307 | -0.69 | -- | -1.27 | 0.165 | 16.2 | 78.47 | 1140 | -- | -- |
| 65.13 | 0.376 | 7.5 | 0.00315 | 0.312 | -0.804 | -- | -- | 0.202 | 15.3 | 78.95 | 1263 | -- | -- |
| 68.78 | 0.386 | 7.51 | -0.0918 | -- | -0.852 | -- | -1.12 | 0.167 | -- | 79 | 1197 | -- | -- |
| 68.36 | 0.388 | 7.51 | -0.0682 | 0.408 | -- | 1.23 | -- | 0.156 | 14.7 | -- | -- | -- | -- |
| 73.63 | 0.402 | 7.51 | -0.0382 | 0.414 | -- | -- | -- | 0.163 | 14.9 | -- | -- | -- | -- |
| 70.04 | 0.39 | 7.5 | 0.000367 | -- | -0.948 | -- | -- | 0.202 | -- | 78.82 | 1225 | -- | -- |
| 65.13 | 0.376 | 7.5 | -- | 0.312 | -0.803 | -- | -- | 0.202 | 15.3 | 78.95 | 1263 | -- | -- |
| 83.51 | 0.427 | 7.51 | -0.0558 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 73.67 | 0.401 | 7.51 | -- | 0.414 | -- | -- | -- | 0.167 | 14.9 | -- | -- | -- | -- |
| 70.04 | 0.39 | 7.5 | -- | -- | -0.948 | -- | -- | 0.202 | -- | 78.82 | 1225 | -- | -- |
| 83.59 | 0.427 | 7.51 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.39 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 7 | 57.79 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 28 | 58.29 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 47 | 58.66 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 49 | 58.71 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 64 | 58.92 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 103 | 59.32 | humidity | 90.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 110 | 59.39 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 113 | 59.44 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 126 | 59.55 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 139 | 59.62 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 143 | 59.66 | wind | 7.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 144 | 59.66 | wind | 7.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 152 | 59.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 154 | 59.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 157 | 59.73 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 24 | 15 |
| 158 | 59.73 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 22 | 17 |
| 172 | 59.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 174 | 59.81 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 177 | 59.82 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 179 | 59.82 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 181 | 59.83 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 191 | 59.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 195 | 59.86 | humidity | 90.0 | 720 | > th | dose independent | rect. | 21 | 3 |
| 247 | 60.05 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 253 | 60.08 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 263 | 60.10 | humidity | 50.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 268 | 60.12 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 281 | 60.17 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 284 | 60.17 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 305 | 60.22 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 343 | 60.30 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 357 | 60.34 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 386 | 60.41 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 387 | 60.41 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 15 |
| 461 | 60.53 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 473 | 60.55 | humidity | 80.0 | 720 | > th | dose independent | rect. | 18 | 15 |
| 474 | 60.55 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 19 |
| 485 | 60.56 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 496 | 60.57 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 515 | 60.60 | wind | 9.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 528 | 60.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 529 | 60.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 535 | 60.62 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 561 | 60.65 | wind | 9.0 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 577 | 60.67 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 582 | 60.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 608 | 60.71 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 5 |
| 615 | 60.72 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 618 | 60.73 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 625 | 60.73 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 639 | 60.75 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 671 | 60.78 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 22 | 12 |
| 698 | 60.82 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 714 | 60.84 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 763 | 60.87 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 768 | 60.88 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 789 | 60.91 | wind | 5.0 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 795 | 60.91 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 808 | 60.92 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 831 | 60.94 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 849 | 60.95 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 880 | 60.97 | humidity | 80.0 | 720 | > th | dose independent | sin | 11 | NA |
| 911 | 60.99 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 914 | 60.99 | wind | 5.0 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 916 | 60.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 928 | 61.01 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 998 | 61.06 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 8 |
| 999 | 61.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |