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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0143600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Avr9/Cf-9 rapidly elicited protein 14 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.2 (0.0638) R2 : 0.811
β1 : 5.36 (0.246) R2dD : 0.277 R2D : -0.0418
β2 : 4.86 (0.133) R2dC : 0.553 R2C : 0.549
β3 : -9.27 (0.509) R2dE : 0.299 R2E : -0.183
β4 : 3.67 (0.508) R2dD*C : 0.0201 R2D*C : 0.0277
β5 : -38.8 (2.38) R2dD*E : 0.242 R2D*E : -0.157
γ1 : 1.11 (0.126) R2dN8 : 0.0484 R2N8 : -0.0199
σ : 1.04
deviance : 487.56
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_____
C
peak time of C : 11
E
wheather : radiation
threshold : 1.007
memory length : 1442
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2
open length of G : 3.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
487.56 1.04 7.2 5.36 4.86 -9.27 3.67 -38.8 1.11 11 1.007 1442 2 3.03
687.21 1.22 6.53 5.23 4.83 -7.35 4.01 -- 1.92 11 1.515 1444 2.12 3.12
538.13 1.08 7.22 5.58 4.89 -8.97 -- -36.5 1.05 11 1.298 1441 2 3.05
659.5 1.2 6.59 4.13 4.83 -5.72 -- -- 1.56 10.6 1.108 1453 2.12 3.17
1895.16 2.03 7.45 5.62 -- -9.65 -- -33.1 1.06 -- 2.291 1441 1.98 3.08
857.04 1.37 6.78 2.57 4.89 -- 4.05 -- 0.907 11.3 -- -- -- --
927.24 1.43 6.77 2.73 4.87 -- -- -- 0.922 11.3 -- -- -- --
2018.84 2.09 6.89 3.29 -- -5.36 -- -- 0.965 -- 1.061 1462 2.23 3.2
711.22 1.24 6.97 -- 4.66 -5.44 -- -- 0.069 10.7 0.8006 1472 1.58 4.92
2411.28 2.29 6.89 2.61 -- -- -- -- 0.877 -- -- -- -- --
1123.57 1.57 6.84 -- 4.84 -- -- -- 0.618 11.2 -- -- -- --
2018.52 2.09 7.08 -- -- -6.14 -- -- -0.0278 -- 0.7884 1484 1.13 5.47
2590.76 2.38 6.96 -- -- -- -- -- 0.588 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 550.58 radiation 1 1440 < th dose dependent rect. 2 3
3 557.57 radiation 1 1440 < th dose dependent rect. 21 8
6 565.74 radiation 1 14400 > th dose independent rect. 18 1
21 572.40 temperature 25 14400 > th dose independent rect. 17 1
24 572.98 temperature 25 14400 < th dose independent rect. 17 1
25 575.03 radiation 40 1440 < th dose dependent rect. 18 11
28 575.41 humidity 90 43200 > th dose independent rect. 22 1
30 575.75 temperature 25 14400 > th dose independent rect. 10 4
31 575.83 temperature 25 14400 > th dose independent rect. 10 2
35 576.37 temperature 25 14400 < th dose independent rect. 10 3
39 576.66 temperature 20 14400 > th dose dependent rect. 17 1
50 577.03 temperature 25 14400 < th dose independent rect. 16 3
51 577.30 temperature 25 14400 > th dose independent rect. 10 10
53 577.47 temperature 25 14400 < th dose independent rect. 10 10
63 577.99 temperature 25 4320 > th dose independent rect. 6 6
112 579.38 temperature 25 4320 < th dose independent rect. 6 6
114 579.44 temperature 25 14400 > th dose independent rect. 16 3
122 579.63 temperature 25 14400 < th dose independent sin 22 NA
129 579.71 humidity 90 43200 > th dose dependent rect. 22 1
137 579.85 temperature 25 14400 < th dose independent rect. 4 15
142 579.91 temperature 25 14400 > th dose independent sin 22 NA
154 580.04 temperature 25 14400 > th dose independent rect. 4 14
175 580.41 humidity 80 43200 > th dose independent rect. 12 1
223 581.08 radiation 1 14400 < th dose independent rect. 18 11
251 581.44 humidity 90 43200 > th dose independent rect. 18 5
276 581.77 radiation 1 14400 < th dose independent rect. 18 2
293 581.96 radiation 1 14400 < th dose independent rect. 18 4
294 581.96 radiation 1 14400 < th dose independent rect. 18 6
425 583.60 temperature 25 4320 > th dose dependent rect. 6 10
426 583.62 temperature 20 14400 > th dose dependent sin 17 NA
526 584.54 humidity 90 43200 < th dose independent rect. 18 1
555 584.76 temperature 25 4320 > th dose dependent sin 2 NA
668 585.55 temperature 20 4320 > th dose dependent rect. 6 3
683 585.68 temperature 20 14400 > th dose dependent rect. 4 18
697 585.76 humidity 80 43200 < th dose independent rect. 12 1
737 586.01 radiation 1 43200 < th dose dependent rect. 21 8
816 586.41 temperature 20 14400 < th dose independent rect. 19 7
848 586.64 temperature 20 14400 < th dose independent rect. 21 4
850 586.65 temperature 20 14400 > th dose independent rect. 21 4
900 586.90 temperature 20 14400 > th dose independent rect. 19 7
924 587.04 temperature 20 14400 > th dose dependent no NA NA