Os08g0143400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SWIRM domain containing protein.
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Os08g0143400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SWIRM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.43 | 0.327 | 9.97 | 1.91 | 1.14 | -0.628 | 0.316 | -0.184 | 0.73 | 21.7 | 20.4 | 412 | -- | -- |
| 48.51 | 0.324 | 9.97 | 1.88 | 1.13 | -0.603 | 0.356 | -- | 0.721 | 21.7 | 20.59 | 436 | -- | -- |
| 48.79 | 0.325 | 9.97 | 1.91 | 1.14 | -0.635 | -- | -0.245 | 0.729 | 21.7 | 20.4 | 411 | -- | -- |
| 48.97 | 0.326 | 9.97 | 1.87 | 1.14 | -0.601 | -- | -- | 0.722 | 21.7 | 20.5 | 394 | -- | -- |
| 100.71 | 0.467 | 9.99 | 1.78 | -- | -0.955 | -- | -0.0529 | 0.494 | -- | 25.2 | 739 | -- | -- |
| 60.13 | 0.364 | 9.94 | 2.08 | 1.18 | -- | 0.397 | -- | 0.85 | 21.5 | -- | -- | -- | -- |
| 60.71 | 0.365 | 9.94 | 2.07 | 1.18 | -- | -- | -- | 0.85 | 21.5 | -- | -- | -- | -- |
| 100.62 | 0.467 | 9.99 | 1.79 | -- | -0.967 | -- | -- | 0.496 | -- | 25.2 | 739 | -- | -- |
| 65.72 | 0.378 | 10.1 | -- | 1.16 | -1.65 | -- | -- | 0.239 | 21.3 | 18.2 | 47520 | -- | -- |
| 142.96 | 0.559 | 9.91 | 2.08 | -- | -- | -- | -- | 0.846 | -- | -- | -- | -- | -- |
| 173.49 | 0.616 | 10 | -- | 1.19 | -- | -- | -- | 0.619 | 21.6 | -- | -- | -- | -- |
| 145.57 | 0.562 | 10.1 | -- | -- | -1.67 | -- | -- | 0.216 | -- | 18.45 | 47520 | -- | -- |
| 256.66 | 0.748 | 9.96 | -- | -- | -- | -- | -- | 0.616 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.72 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 5 |
| 4 | 46.11 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 2 |
| 10 | 46.66 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 12 |
| 14 | 46.93 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 13 |
| 15 | 46.99 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 11 |
| 17 | 47.08 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 7 |
| 35 | 47.49 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 12 |
| 55 | 47.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 56 | 47.81 | temperature | 20 | 720 | < th | dose independent | sin | 13 | NA |
| 57 | 47.82 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 61 | 47.84 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 22 |
| 65 | 47.85 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 19 |
| 69 | 47.88 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 72 | 47.90 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 81 | 47.96 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 93 | 48.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 94 | 48.01 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 98 | 48.03 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 2 |
| 102 | 48.04 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 20 |
| 110 | 48.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 118 | 48.14 | temperature | 25 | 270 | < th | dose dependent | sin | 8 | NA |
| 119 | 48.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 124 | 48.18 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 153 | 48.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 250 | 48.66 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 259 | 48.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 277 | 48.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 8 |
| 337 | 48.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 500 | 49.15 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 721 | 49.45 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 21 |
| 815 | 49.58 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 879 | 49.64 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 889 | 49.65 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 898 | 49.67 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 947 | 49.72 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 971 | 49.74 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 23 |
| 985 | 49.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |