Os08g0140700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0140700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.48 | 0.547 | 3.13 | -0.269 | 0.353 | 0.652 | 0.631 | -1.04 | -0.23 | 7.55 | 40.81 | 1531 | -- | -- |
| 136.5 | 0.544 | 3.13 | -0.142 | 0.354 | 0.748 | 0.653 | -- | -0.181 | 7.5 | 45.27 | 1531 | -- | -- |
| 136.57 | 0.544 | 3.13 | -0.247 | 0.354 | 0.66 | -- | -1 | -0.227 | 7.45 | 41.16 | 1531 | -- | -- |
| 137.54 | 0.546 | 3.12 | -0.124 | 0.35 | 0.746 | -- | -- | -0.179 | 7.51 | 45.29 | 1531 | -- | -- |
| 143.23 | 0.557 | 3.14 | -0.217 | -- | 0.707 | -- | -0.977 | -0.215 | -- | 42.78 | 1531 | -- | -- |
| 146.12 | 0.567 | 3.11 | -0.146 | 0.363 | -- | 0.601 | -- | -0.126 | 7.55 | -- | -- | -- | -- |
| 147.13 | 0.568 | 3.11 | -0.132 | 0.363 | -- | -- | -- | -0.126 | 7.56 | -- | -- | -- | -- |
| 144.08 | 0.559 | 3.13 | -0.13 | -- | 0.794 | -- | -- | -0.171 | -- | 46.28 | 1531 | -- | -- |
| 137.96 | 0.547 | 3.12 | -- | 0.35 | 0.738 | -- | -- | -0.171 | 7.55 | 45.38 | 1531 | -- | -- |
| 154.21 | 0.58 | 3.12 | -0.126 | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
| 147.58 | 0.568 | 3.11 | -- | 0.362 | -- | -- | -- | -0.112 | 7.58 | -- | -- | -- | -- |
| 144.39 | 0.56 | 3.12 | -- | -- | 0.832 | -- | -- | -0.144 | -- | 47.32 | 1531 | -- | -- |
| 154.63 | 0.58 | 3.11 | -- | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.79 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 1 |
| 3 | 134.39 | humidity | 60 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 17 | 134.65 | humidity | 60 | 1440 | < th | dose dependent | sin | 6 | NA |
| 18 | 134.65 | humidity | 60 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 37 | 135.07 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 14 |
| 42 | 135.28 | humidity | 60 | 1440 | < th | dose independent | sin | 6 | NA |
| 44 | 135.32 | radiation | 40 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 45 | 135.37 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 60 | 135.39 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 81 | 135.43 | humidity | 50 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 85 | 135.46 | humidity | 80 | 4320 | < th | dose dependent | rect. | 18 | 16 |
| 119 | 135.63 | humidity | 70 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 127 | 135.67 | humidity | 50 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 128 | 135.70 | radiation | 40 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 130 | 135.71 | humidity | 50 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 134 | 135.73 | humidity | 60 | 1440 | > th | dose independent | sin | 6 | NA |
| 171 | 135.76 | humidity | 70 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 173 | 135.77 | humidity | 50 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 175 | 135.78 | radiation | 40 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 179 | 135.78 | radiation | 40 | 1440 | > th | dose dependent | sin | 21 | NA |
| 198 | 135.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 211 | 135.82 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 9 |
| 235 | 135.86 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 262 | 135.90 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 500 | 136.03 | humidity | 80 | 4320 | < th | dose dependent | rect. | 24 | 10 |
| 516 | 136.06 | humidity | 80 | 4320 | < th | dose dependent | rect. | 2 | 8 |
| 526 | 136.11 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 529 | 136.12 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 530 | 136.12 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 540 | 136.13 | humidity | 80 | 4320 | < th | dose dependent | sin | 9 | NA |
| 541 | 136.13 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 551 | 136.14 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 608 | 136.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 614 | 136.31 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 626 | 136.33 | humidity | 60 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 650 | 136.35 | humidity | 70 | 4320 | < th | dose dependent | rect. | 8 | 2 |
| 663 | 136.42 | radiation | 40 | 1440 | > th | dose independent | sin | 21 | NA |
| 710 | 136.49 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 714 | 136.50 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 721 | 136.50 | radiation | 40 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 743 | 136.51 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 745 | 136.52 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 801 | 136.55 | radiation | 40 | 1440 | > th | dose independent | no | NA | NA |
| 948 | 136.60 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 949 | 136.60 | humidity | 70 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 950 | 136.60 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 959 | 136.60 | wind | 9 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 961 | 136.60 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 7 | 1 |