Os08g0139400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0139400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.92 | 0.297 | 11.6 | 1.15 | 0.56 | 0.766 | -0.226 | -0.234 | 0.731 | 5.56 | 30 | 11 | -- | -- |
| 40.16 | 0.295 | 11.6 | 1.16 | 0.56 | 0.76 | -0.264 | -- | 0.73 | 5.52 | 30 | 11 | -- | -- |
| 40.04 | 0.295 | 11.6 | 1.15 | 0.558 | 0.768 | -- | -0.244 | 0.732 | 5.58 | 30 | 11 | -- | -- |
| 40.31 | 0.296 | 11.6 | 1.16 | 0.557 | 0.767 | -- | -- | 0.733 | 5.59 | 30 | 11 | -- | -- |
| 50.7 | 0.332 | 11.6 | 1.18 | -- | 0.763 | -- | -0.177 | 0.789 | -- | 8.288 | 287 | -- | -- |
| 50.81 | 0.334 | 11.6 | 1.12 | 0.931 | -- | -0.259 | -- | 0.715 | 2.54 | -- | -- | -- | -- |
| 51.05 | 0.335 | 11.6 | 1.13 | 0.93 | -- | -- | -- | 0.717 | 2.53 | -- | -- | -- | -- |
| 50.56 | 0.331 | 11.6 | 1.15 | -- | 0.798 | -- | -- | 0.75 | -- | 8.116 | 293 | -- | -- |
| 75.31 | 0.404 | 11.7 | -- | 0.61 | 0.72 | -- | -- | 0.601 | 4.67 | 40 | 11 | -- | -- |
| 101.9 | 0.472 | 11.6 | 1.17 | -- | -- | -- | -- | 0.74 | -- | -- | -- | -- | -- |
| 84.54 | 0.43 | 11.7 | -- | 0.952 | -- | -- | -- | 0.591 | 2.54 | -- | -- | -- | -- |
| 84.98 | 0.429 | 11.7 | -- | -- | 0.842 | -- | -- | 0.626 | -- | 9.992 | 325 | -- | -- |
| 137.81 | 0.548 | 11.7 | -- | -- | -- | -- | -- | 0.611 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.39 | radiation | 30.0 | 10 | < th | dose dependent | sin | 3 | NA |
| 11 | 37.29 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 16 | 37.43 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 3 | 11 |
| 32 | 37.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 39 | 37.91 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 40 | 37.92 | radiation | 1.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 59 | 38.25 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 15 |
| 62 | 38.29 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 69 | 38.33 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 17 |
| 88 | 38.56 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 91 | 38.61 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 126 | 38.84 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 11 |
| 168 | 39.08 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 174 | 39.12 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 200 | 39.31 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 202 | 39.33 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 225 | 39.47 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 226 | 39.47 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 24 | 14 |
| 229 | 39.48 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 238 | 39.54 | radiation | 10.0 | 90 | > th | dose independent | rect. | 17 | 21 |
| 252 | 39.62 | radiation | 10.0 | 90 | > th | dose independent | rect. | 6 | 8 |
| 266 | 39.63 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 9 |
| 283 | 39.72 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 290 | 39.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 295 | 39.74 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 312 | 39.77 | radiation | 20.0 | 30 | < th | dose independent | sin | 4 | NA |
| 315 | 39.77 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 317 | 39.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 329 | 39.83 | radiation | 20.0 | 30 | < th | dose independent | rect. | 1 | 19 |
| 353 | 39.92 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 358 | 39.94 | radiation | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 371 | 39.96 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 417 | 40.05 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 8 |
| 421 | 40.05 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 442 | 40.14 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 444 | 40.14 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 24 | 8 |
| 449 | 40.14 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 455 | 40.17 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 458 | 40.18 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 14 |
| 485 | 40.22 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 534 | 40.31 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 564 | 40.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 569 | 40.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 570 | 40.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 625 | 40.44 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 630 | 40.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 660 | 40.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 664 | 40.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 691 | 40.56 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 698 | 40.58 | radiation | 10.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 706 | 40.59 | radiation | 20.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 746 | 40.64 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 755 | 40.64 | radiation | 1.0 | 10 | > th | dose dependent | no | NA | NA |
| 836 | 40.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 839 | 40.66 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 894 | 40.73 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 963 | 40.80 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 969 | 40.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 970 | 40.81 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 971 | 40.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 972 | 40.81 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 973 | 40.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 8 |
| 974 | 40.81 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 975 | 40.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 990 | 40.83 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 18 |
| 994 | 40.83 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 18 |