Os08g0138900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0138900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.82 | 0.628 | 12.7 | -0.965 | 1.25 | -2.99 | 1.97 | -1 | 0.184 | 5.41 | 50.07 | 698 | 16.2 | 5.02 |
| 180.95 | 0.627 | 12.8 | -0.966 | 1.17 | -2.84 | 2 | -- | 0.15 | 5.97 | 52.37 | 688 | 16.3 | 5 |
| 187.27 | 0.637 | 12.7 | -0.96 | 1.2 | -2.93 | -- | -0.492 | 0.204 | 5.61 | 51.3 | 695 | 16.2 | 4.92 |
| 185.97 | 0.635 | 12.8 | -0.927 | 1.19 | -2.8 | -- | -- | 0.123 | 6.62 | 58.95 | 676 | 17.2 | 3.85 |
| 224.11 | 0.697 | 12.8 | -1.07 | -- | -2.93 | -- | -0.0555 | 0.0967 | -- | 50.69 | 607 | 15.5 | 5.35 |
| 260.22 | 0.756 | 12.7 | -1.03 | 2.11 | -- | 0.833 | -- | 0.132 | 10.4 | -- | -- | -- | -- |
| 263.02 | 0.759 | 12.7 | -0.999 | 2.11 | -- | -- | -- | 0.135 | 10.5 | -- | -- | -- | -- |
| 220.59 | 0.692 | 12.8 | -0.846 | -- | -2.78 | -- | -- | 0.14 | -- | 46.87 | 635 | 15.5 | 4.89 |
| 206.78 | 0.67 | 12.7 | -- | 1.28 | -2.75 | -- | -- | 0.282 | 6.5 | 59.77 | 671 | 17.6 | 3.51 |
| 535.47 | 1.08 | 12.8 | -1.04 | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
| 289.33 | 0.796 | 12.7 | -- | 2.11 | -- | -- | -- | 0.247 | 10.5 | -- | -- | -- | -- |
| 244.54 | 0.728 | 12.8 | -- | -- | -2.9 | -- | -- | 0.263 | -- | 44.39 | 650 | 14.8 | 5.72 |
| 563.75 | 1.11 | 12.7 | -- | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.80 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 11 | 186.41 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 19 | 187.87 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 21 | 188.09 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 53 | 190.87 | humidity | 50.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 83 | 193.27 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 11 |
| 84 | 193.31 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 92 | 193.77 | humidity | 80.0 | 720 | > th | dose independent | rect. | 16 | 5 |
| 109 | 194.77 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 116 | 195.11 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 20 |
| 117 | 195.16 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 14 |
| 121 | 195.35 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 127 | 195.47 | radiation | 1.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 155 | 196.43 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 163 | 196.59 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 12 |
| 164 | 196.61 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 14 |
| 207 | 197.83 | humidity | 90.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 214 | 198.04 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 3 |
| 235 | 198.46 | humidity | 80.0 | 720 | < th | dose independent | rect. | 14 | 7 |
| 244 | 198.68 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 20 |
| 295 | 199.71 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 17 |
| 309 | 199.98 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 1 |
| 324 | 200.28 | radiation | 1.0 | 720 | < th | dose independent | sin | 15 | NA |
| 355 | 200.87 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 10 |
| 429 | 201.39 | humidity | 70.0 | 720 | > th | dose independent | sin | 14 | NA |
| 511 | 202.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 548 | 202.43 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 591 | 202.93 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 7 |
| 626 | 203.27 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 657 | 203.77 | temperature | 30.0 | 720 | < th | dose independent | sin | 14 | NA |
| 695 | 204.18 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 816 | 205.23 | humidity | 70.0 | 720 | < th | dose independent | rect. | 16 | 16 |
| 829 | 205.28 | temperature | 30.0 | 720 | > th | dose independent | rect. | 14 | 5 |
| 872 | 205.31 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 14 |
| 926 | 205.53 | humidity | 70.0 | 720 | < th | dose independent | sin | 13 | NA |
| 942 | 205.66 | humidity | 80.0 | 720 | < th | dose independent | sin | 17 | NA |
| 955 | 205.76 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 966 | 205.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 967 | 205.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |