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Os08g0138600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.35 (0.0323) R2 : 0.83
β1 : 2.03 (0.118) R2dD : 0.115 R2D : 0.1
β2 : 3.24 (0.0884) R2dC : 0.606 R2C : 0.0872
β3 : 2.92 (0.0786) R2dE : 0.626 R2E : 0.115
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.448 (0.0688) R2dN8 : 0.0211 R2N8 : -0.0103
σ : 0.602
deviance : 167.21
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_____
C
peak time of C : 20.8
E
wheather : radiation
threshold : 1.35
memory length : 320
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 20.6
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.06 0.6 7.35 2.05 3.32 2.95 -0.269 -1.16 0.457 20.8 1.343 293 20.3 --
166.5 0.601 7.36 2.1 3.23 2.95 0.593 -- 0.441 20.8 1.348 315 20.5 --
162.65 0.594 7.36 2.07 3.28 2.95 -- -1.05 0.449 20.8 1.329 304 20.4 --
167.21 0.602 7.35 2.03 3.24 2.92 -- -- 0.448 20.8 1.35 320 20.6 --
207.39 0.671 7.26 2.16 -- 3.57 -- -0.384 0.459 -- -68.15 1006 21.2 --
207.37 0.675 7.32 2.15 3.57 -- -0.469 -- 0.456 17.2 -- -- -- --
207.92 0.675 7.32 2.15 3.57 -- -- -- 0.454 17.2 -- -- -- --
207.92 0.672 7.26 2.15 -- 3.57 -- -- 0.454 -- -54.47 1008 21.2 --
271.04 0.767 7.41 -- 2.99 3.03 -- -- 0.216 20.9 0.157 395 21 --
873.55 1.38 7.28 2.02 -- -- -- -- 0.365 -- -- -- -- --
329.55 0.849 7.38 -- 3.53 -- -- -- 0.215 17.2 -- -- -- --
329.55 0.845 7.31 -- -- 3.53 -- -- 0.215 -- -36.75 1027 21.3 --
981.56 1.46 7.33 -- -- -- -- -- 0.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 158.79 wind 7.0 270 < th dose independent rect. 7 19
2 158.95 humidity 70.0 90 > th dose independent rect. 3 8
3 159.18 wind 7.0 270 < th dose independent rect. 6 21
5 160.61 humidity 70.0 90 > th dose independent rect. 3 6
6 161.11 radiation 30.0 270 < th dose dependent rect. 2 7
7 161.19 radiation 30.0 90 < th dose independent rect. 3 6
9 161.45 wind 9.0 270 < th dose dependent rect. 7 19
11 161.83 precipitation 0.1 270 < th dose independent rect. 3 3
12 161.83 precipitation 0.1 270 < th dose dependent rect. 3 3
14 161.95 wind 7.0 270 < th dose independent rect. 8 17
15 161.96 radiation 20.0 270 < th dose dependent rect. 3 4
21 162.47 wind 5.0 270 < th dose independent rect. 3 3
23 162.57 radiation 20.0 270 < th dose independent rect. 1 8
26 162.63 precipitation 0.1 270 < th dose independent rect. 2 5
27 162.63 precipitation 0.1 270 < th dose dependent rect. 2 5
29 162.71 radiation 10.0 270 < th dose independent rect. 3 4
48 163.36 atmosphere 1010.0 270 < th dose independent rect. 3 3
49 163.40 atmosphere 1010.0 270 < th dose independent rect. 12 9
56 163.44 wind 7.0 270 < th dose independent rect. 2 5
61 163.54 temperature 10.0 270 > th dose independent rect. 3 3
63 163.54 temperature 30.0 270 < th dose independent rect. 3 3
64 163.54 humidity 50.0 270 > th dose independent rect. 3 3
67 163.54 atmosphere 995.0 270 > th dose independent rect. 3 3
72 163.54 temperature 10.0 270 > th dose independent rect. 6 21
78 163.77 wind 9.0 270 < th dose dependent rect. 7 8
82 163.90 humidity 50.0 270 > th dose dependent rect. 3 4
85 163.99 temperature 10.0 270 > th dose independent rect. 2 5
87 163.99 temperature 30.0 270 < th dose independent rect. 2 5
88 163.99 humidity 50.0 270 > th dose independent rect. 2 5
90 163.99 atmosphere 995.0 270 > th dose independent rect. 2 5
91 163.99 atmosphere 1015.0 270 < th dose independent rect. 2 5
93 163.99 temperature 10.0 270 > th dose independent rect. 7 19
95 164.04 temperature 15.0 270 > th dose independent rect. 15 16
105 164.30 humidity 70.0 270 > th dose independent rect. 1 7
106 164.32 humidity 70.0 270 > th dose dependent rect. 2 7
110 164.40 temperature 15.0 270 > th dose independent rect. 12 9
111 164.42 wind 7.0 270 < th dose independent rect. 21 15
118 164.58 wind 9.0 90 < th dose dependent rect. 9 18
122 164.63 precipitation 0.1 270 < th dose independent rect. 7 19
123 164.63 precipitation 0.1 270 < th dose dependent rect. 7 19
126 164.68 radiation 1.0 270 < th dose independent rect. 3 9
127 164.68 precipitation 0.1 270 < th dose independent rect. 6 21
128 164.68 precipitation 0.1 270 < th dose dependent rect. 6 21
152 165.07 radiation 1.0 270 < th dose independent rect. 3 16
160 165.20 wind 1.0 270 > th dose independent rect. 2 5
186 165.67 wind 7.0 270 < th dose independent rect. 7 8
207 166.02 radiation 1.0 270 < th dose dependent rect. 3 15
226 166.25 wind 9.0 270 < th dose dependent rect. 3 3
233 166.33 temperature 10.0 270 > th dose dependent rect. 3 3
262 166.59 temperature 10.0 90 > th dose independent rect. 9 18
268 166.64 temperature 15.0 270 > th dose independent rect. 7 8
277 166.76 radiation 40.0 270 < th dose dependent rect. 15 16
283 166.84 radiation 1.0 270 > th dose independent sin 2 NA
304 167.05 wind 7.0 10 < th dose independent rect. 9 18
310 167.12 wind 9.0 90 < th dose dependent rect. 3 6
325 167.19 wind 7.0 10 < th dose independent rect. 9 20
341 167.44 radiation 1.0 270 > th dose independent rect. 7 8
346 167.58 humidity 90.0 270 < th dose independent rect. 7 6
353 167.65 atmosphere 1010.0 270 < th dose independent rect. 14 17
367 167.70 temperature 15.0 10 > th dose independent rect. 16 17
383 167.86 temperature 10.0 90 > th dose dependent rect. 8 19
394 167.97 wind 1.0 270 > th dose independent rect. 3 3
398 168.02 atmosphere 995.0 270 > th dose independent rect. 7 19
434 168.30 temperature 10.0 270 > th dose independent rect. 21 14
435 168.30 atmosphere 995.0 270 > th dose independent rect. 21 14
447 168.40 atmosphere 1015.0 270 < th dose dependent rect. 3 3
449 168.43 humidity 90.0 270 > th dose independent rect. 4 1
456 168.54 radiation 40.0 90 < th dose independent rect. 3 19
465 168.66 radiation 30.0 90 < th dose independent rect. 15 18
471 168.74 humidity 50.0 270 > th dose independent rect. 21 14
486 168.83 precipitation 0.1 270 < th dose independent rect. 12 9
488 168.83 precipitation 0.1 270 < th dose dependent rect. 12 9
491 168.85 wind 1.0 270 > th dose independent rect. 11 10
519 168.99 radiation 30.0 270 < th dose independent rect. 15 16
541 169.24 precipitation 0.1 270 < th dose independent rect. 15 16
542 169.24 precipitation 0.1 270 < th dose dependent rect. 15 16
547 169.26 precipitation 0.1 270 < th dose independent rect. 7 8
549 169.26 precipitation 0.1 270 < th dose dependent rect. 7 8
559 169.33 atmosphere 995.0 270 > th dose independent rect. 6 21
562 169.34 precipitation 0.1 270 < th dose independent rect. 21 15
564 169.34 precipitation 0.1 270 < th dose dependent rect. 21 15
591 169.41 wind 7.0 10 < th dose dependent rect. 5 4
603 169.49 wind 5.0 270 < th dose independent rect. 20 6
611 169.55 wind 5.0 10 < th dose independent rect. 3 6
614 169.59 radiation 1.0 270 < th dose independent sin 2 NA
618 169.60 atmosphere 1015.0 270 < th dose independent rect. 7 8
625 169.62 precipitation 0.1 270 < th dose independent rect. 3 16
626 169.62 atmosphere 995.0 90 > th dose independent rect. 9 18
627 169.62 precipitation 0.1 270 < th dose dependent rect. 3 16
629 169.64 temperature 10.0 10 > th dose dependent rect. 9 19
646 169.75 atmosphere 995.0 270 > th dose independent rect. 7 8
651 169.76 precipitation 0.1 10 < th dose independent rect. 3 6
652 169.76 precipitation 0.1 10 < th dose dependent rect. 3 6
683 170.00 wind 9.0 90 < th dose dependent rect. 9 6
690 170.05 wind 3.0 10 < th dose independent rect. 5 4
692 170.05 precipitation 0.1 270 < th dose independent rect. 2 18
693 170.05 precipitation 0.1 270 < th dose dependent rect. 2 18
711 170.19 wind 7.0 270 < th dose independent rect. 19 8
713 170.19 humidity 50.0 90 > th dose dependent rect. 3 19
729 170.28 humidity 50.0 270 > th dose independent rect. 7 8
734 170.29 radiation 40.0 10 < th dose dependent rect. 5 17
738 170.31 temperature 10.0 90 > th dose dependent rect. 8 7
766 170.43 wind 9.0 270 < th dose independent rect. 12 9
773 170.47 radiation 30.0 10 < th dose independent rect. 5 4
809 170.62 wind 9.0 10 < th dose dependent rect. 3 6
820 170.69 radiation 30.0 10 < th dose independent rect. 16 17
821 170.69 radiation 20.0 90 < th dose independent rect. 3 19
827 170.73 atmosphere 995.0 270 > th dose dependent rect. 20 6
843 170.83 temperature 10.0 270 > th dose dependent rect. 7 5
856 170.90 wind 9.0 270 < th dose independent rect. 15 16
861 170.92 precipitation 0.1 270 < th dose independent rect. 19 8
862 170.92 precipitation 0.1 270 < th dose dependent rect. 19 8
863 170.93 precipitation 0.1 270 < th dose independent rect. 20 6
864 170.93 humidity 60.0 270 > th dose independent rect. 19 8
865 170.93 precipitation 0.1 270 < th dose dependent rect. 20 6
869 170.95 temperature 10.0 270 > th dose independent rect. 19 8
870 170.95 temperature 30.0 270 < th dose independent rect. 19 8
872 170.95 atmosphere 995.0 270 > th dose independent rect. 19 8
873 170.95 radiation 1.0 270 < th dose independent rect. 19 8
878 170.95 temperature 10.0 270 > th dose independent rect. 3 16
879 170.95 atmosphere 1015.0 270 < th dose independent rect. 3 16
880 170.95 radiation 1.0 270 < th dose dependent rect. 19 8
885 170.97 wind 5.0 270 < th dose independent rect. 21 4
903 171.06 temperature 10.0 10 > th dose dependent rect. 5 4
909 171.11 atmosphere 995.0 270 > th dose dependent rect. 22 3
923 171.17 precipitation 0.1 10 < th dose independent rect. 9 18
924 171.17 precipitation 0.1 10 < th dose dependent rect. 9 18
939 171.28 radiation 1.0 270 < th dose dependent rect. 20 6
940 171.29 temperature 10.0 270 > th dose independent rect. 20 6
941 171.29 temperature 30.0 270 < th dose independent rect. 20 6
942 171.29 humidity 50.0 270 > th dose independent rect. 20 6
945 171.29 atmosphere 995.0 270 > th dose independent rect. 20 6
946 171.29 radiation 1.0 270 < th dose independent rect. 20 6
953 171.29 temperature 10.0 270 > th dose independent rect. 2 18
954 171.29 atmosphere 1015.0 270 < th dose independent rect. 2 18
959 171.30 atmosphere 995.0 270 > th dose independent rect. 12 9
982 171.33 humidity 50.0 10 > th dose dependent rect. 5 17
991 171.37 atmosphere 995.0 270 > th dose independent rect. 15 16
1000 171.40 temperature 10.0 1440 > th dose independent rect. 4 6