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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0136600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.77 (0.0717) R2 : 0.271
β1 : -4.72 (0.411) R2dD : 5.32 R2D : -8.38
β2 : -- (--) R2dC : -- R2C : --
β3 : 274 (22.7) R2dE : 745 R2E : -738
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -1590 (133) R2dD*E : 738 R2D*E : -745
γ1 : -0.12 (0.0488) R2dN8 : 0.0118 R2N8 : -2.62
σ : 0.43
deviance : 84.29
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.993
open length of G : 1.01

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.91 0.427 3.76 -4.68 0.0646 270 0.244 -1570 -0.12 4.68 1000 10 1 1
109.56 0.491 2.95 0.075 0.0777 1.73 0.334 -- -0.127 4.03 1000 10 1 1
83.97 0.43 3.76 -4.72 0.0785 273 -- -1590 -0.121 6.64 1000 10 0.993 1.01
105.58 0.479 2.95 0.0704 0.0644 1.98 -- -- -0.131 4.28 1004 8 0.783 1.1
84.29 0.43 3.77 -4.72 -- 274 -- -1590 -0.12 -- 1000 10 0.993 1.01
112.92 0.498 2.95 0.0893 0.0928 -- 0.398 -- -0.132 3.75 -- -- -- --
113.32 0.499 2.95 0.0836 0.104 -- -- -- -0.134 5.07 -- -- -- --
105.6 0.479 2.95 0.0658 -- 2.37 -- -- -0.119 -- 1003 6 0.7 1.21
105.41 0.478 2.95 -- 0.0766 2.38 -- -- -0.132 4.71 1003 8 0.716 1.18
113.9 0.499 2.96 0.0873 -- -- -- -- -0.132 -- -- -- -- --
113.51 0.498 2.96 -- 0.106 -- -- -- -0.144 5.04 -- -- -- --
105.68 0.479 2.95 -- -- 2.39 -- -- -0.127 -- 1003 8 0.67 1.21
114.1 0.499 2.96 -- -- -- -- -- -0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.91 atmosphere 1000.0 10 < th dose independent rect. 1 1
8 83.91 atmosphere 1000.0 10 < th dose dependent rect. 1 1
50 102.26 temperature 30.0 90 > th dose dependent rect. 10 1
62 104.49 temperature 30.0 90 > th dose independent rect. 10 1
75 105.29 wind 9.0 90 > th dose independent rect. 13 2
77 105.29 wind 9.0 90 > th dose dependent rect. 13 2
79 105.30 wind 9.0 10 > th dose independent rect. 13 1
91 105.30 wind 9.0 10 > th dose dependent rect. 13 1
151 106.85 atmosphere 1000.0 10 < th dose independent rect. 22 5
192 107.64 temperature 30.0 10 > th dose dependent rect. 12 1
225 107.99 wind 1.0 10 > th dose independent rect. 1 2
255 108.19 radiation 30.0 10 > th dose independent rect. 13 1
257 108.19 humidity 80.0 90 < th dose independent rect. 21 7
259 108.22 humidity 80.0 90 < th dose dependent rect. 21 7
268 108.34 temperature 20.0 720 > th dose independent rect. 12 12
280 108.51 humidity 80.0 10 < th dose independent rect. 22 7
293 108.60 humidity 80.0 10 < th dose dependent rect. 22 7
296 108.62 humidity 80.0 270 < th dose independent rect. 24 1
300 108.62 humidity 80.0 270 < th dose dependent rect. 24 1
350 108.79 wind 3.0 90 < th dose independent rect. 1 1
352 108.79 radiation 40.0 30 > th dose dependent rect. 13 1
375 108.82 humidity 80.0 10 < th dose dependent rect. 24 5
397 108.89 wind 1.0 90 > th dose independent rect. 1 1
403 108.91 radiation 20.0 10 > th dose dependent rect. 13 1
408 108.92 temperature 20.0 720 > th dose independent rect. 12 9
443 108.95 temperature 20.0 720 > th dose independent rect. 18 6
452 108.99 temperature 20.0 90 > th dose independent rect. 2 22
453 108.99 temperature 10.0 30 > th dose dependent rect. 3 22
458 109.01 temperature 20.0 720 > th dose independent rect. 16 8
461 109.01 temperature 20.0 270 < th dose dependent rect. 21 7
472 109.06 wind 7.0 30 < th dose independent rect. 2 23
476 109.07 atmosphere 1015.0 30 < th dose independent rect. 2 23
531 109.15 radiation 40.0 90 < th dose independent rect. 2 23
565 109.18 temperature 20.0 270 < th dose dependent sin 14 NA
567 109.18 wind 5.0 90 < th dose dependent rect. 1 1
594 109.24 temperature 20.0 720 > th dose independent rect. 21 3
596 109.24 temperature 20.0 720 > th dose independent rect. 8 16
622 109.29 temperature 15.0 30 > th dose dependent rect. 1 1
631 109.31 temperature 20.0 90 < th dose dependent sin 8 NA
648 109.33 wind 1.0 1440 < th dose dependent rect. 17 4
666 109.37 wind 1.0 1440 > th dose independent rect. 17 1
681 109.40 humidity 50.0 270 > th dose dependent rect. 19 13
707 109.45 temperature 30.0 90 > th dose dependent sin 8 NA
718 109.47 wind 1.0 1440 < th dose independent rect. 17 1
719 109.47 precipitation 0.1 90 < th dose independent rect. 1 1
722 109.47 precipitation 0.1 90 < th dose dependent rect. 1 1
750 109.50 wind 1.0 1440 < th dose dependent rect. 17 1
760 109.51 wind 9.0 30 < th dose dependent rect. 2 23
780 109.54 temperature 10.0 90 > th dose independent rect. 1 1
782 109.54 temperature 30.0 90 < th dose independent rect. 1 1
783 109.54 humidity 50.0 90 > th dose independent rect. 1 1
786 109.54 atmosphere 995.0 90 > th dose independent rect. 1 1
789 109.54 radiation 1.0 90 < th dose independent rect. 1 1
794 109.54 temperature 10.0 90 > th dose independent rect. 2 23
796 109.54 radiation 1.0 90 < th dose dependent rect. 1 1
805 109.55 precipitation 0.1 10 < th dose independent rect. 1 1
810 109.55 precipitation 0.1 10 < th dose dependent rect. 1 1
819 109.55 temperature 20.0 90 < th dose dependent rect. 23 22
820 109.56 atmosphere 995.0 14400 > th dose independent rect. 11 4
821 109.56 wind 5.0 720 < th dose independent rect. 12 12
827 109.56 temperature 20.0 90 < th dose dependent rect. 23 18
862 109.59 atmosphere 995.0 14400 < th dose dependent rect. 14 1
876 109.61 wind 9.0 1440 < th dose independent rect. 2 1
879 109.61 temperature 10.0 1440 > th dose independent rect. 2 1
884 109.61 temperature 30.0 1440 < th dose independent rect. 2 1
888 109.61 humidity 50.0 1440 > th dose independent rect. 2 1
898 109.61 atmosphere 995.0 1440 > th dose independent rect. 2 1
899 109.61 atmosphere 1015.0 1440 < th dose independent rect. 2 1
900 109.61 radiation 1.0 1440 < th dose independent rect. 2 1
920 109.61 precipitation 0.1 1440 > th dose independent rect. 12 1
922 109.61 wind 7.0 720 < th dose independent rect. 16 8
923 109.61 atmosphere 995.0 14400 > th dose independent rect. 7 8
924 109.61 temperature 10.0 1440 > th dose independent rect. 3 23
927 109.61 radiation 1.0 1440 < th dose dependent rect. 2 1
947 109.61 precipitation 0.1 1440 > th dose dependent rect. 12 1
994 109.63 temperature 20.0 90 < th dose dependent rect. 21 19