Os08g0135600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0135600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.57 | 0.288 | 10.2 | -0.417 | 0.671 | 1.1 | -0.538 | -1.09 | -0.0463 | 22.5 | 17.54 | 9 | -- | -- |
| 38.46 | 0.291 | 10.2 | -0.235 | 0.667 | 1.13 | -0.292 | -- | 0.00669 | 22.4 | 15.83 | 12 | -- | -- |
| 38.5 | 0.291 | 10.2 | -0.31 | 0.674 | 1.08 | -- | -0.591 | -0.0185 | 22.4 | 17.54 | 9 | -- | -- |
| 38.81 | 0.292 | 10.2 | -0.224 | 0.668 | 1.14 | -- | -- | 0.00736 | 22.4 | 15.55 | 12 | -- | -- |
| 45.98 | 0.316 | 10.2 | -0.628 | -- | 1.12 | -- | -1.78 | -0.0956 | -- | 17.2 | 627 | -- | -- |
| 52.61 | 0.34 | 10.2 | -0.000754 | 0.571 | -- | -0.197 | -- | 0.176 | 20.4 | -- | -- | -- | -- |
| 52.73 | 0.34 | 10.2 | 0.00557 | 0.572 | -- | -- | -- | 0.176 | 20.3 | -- | -- | -- | -- |
| 48.67 | 0.325 | 10.2 | -0.281 | -- | 1.18 | -- | -- | -0.00698 | -- | 14.97 | 613 | -- | -- |
| 39.98 | 0.296 | 10.2 | -- | 0.655 | 0.995 | -- | -- | 0.0443 | 22.2 | 16.92 | 10 | -- | -- |
| 70.84 | 0.393 | 10.2 | 0.00187 | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
| 52.73 | 0.34 | 10.2 | -- | 0.572 | -- | -- | -- | 0.176 | 20.3 | -- | -- | -- | -- |
| 50.5 | 0.331 | 10.2 | -- | -- | 1.01 | -- | -- | 0.0364 | -- | 16.5 | 604 | -- | -- |
| 70.84 | 0.393 | 10.2 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 2 | 36.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 13 | 37.46 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 25 | 37.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 29 | 37.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 30 | 37.78 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 31 | 37.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 32 | 37.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 33 | 37.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 34 | 37.84 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 35 | 37.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 37 | 37.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 39 | 37.87 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 47 | 37.91 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 54 | 37.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 56 | 37.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 58 | 37.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 60 | 37.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 81 | 38.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 88 | 38.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 115 | 38.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 119 | 38.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 160 | 38.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 229 | 38.41 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 238 | 38.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 266 | 38.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 275 | 38.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 320 | 38.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 338 | 38.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 353 | 38.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 415 | 38.71 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 464 | 38.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 487 | 38.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 500 | 38.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 557 | 38.92 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 564 | 38.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 612 | 38.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 672 | 39.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 687 | 39.07 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 738 | 39.12 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 795 | 39.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 901 | 39.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 946 | 39.33 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |