Os08g0134900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0134900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.31 | 0.362 | 9.89 | -0.832 | 0.505 | 1.56 | -0.207 | -0.241 | -0.425 | 7.82 | 18.54 | 294 | -- | -- |
| 59.33 | 0.359 | 9.89 | -0.799 | 0.49 | 1.56 | -0.192 | -- | -0.411 | 7.69 | 18.38 | 274 | -- | -- |
| 59.41 | 0.359 | 9.89 | -0.827 | 0.505 | 1.55 | -- | -0.162 | -0.422 | 7.93 | 18.5 | 297 | -- | -- |
| 59.43 | 0.359 | 9.89 | -0.794 | 0.49 | 1.56 | -- | -- | -0.411 | 7.79 | 18.41 | 276 | -- | -- |
| 64.12 | 0.373 | 9.89 | -0.692 | -- | 1.63 | -- | 0.415 | -0.37 | -- | 15.68 | 19 | -- | -- |
| 96.19 | 0.46 | 9.84 | -0.432 | 0.409 | -- | 0.321 | -- | -0.148 | 13.1 | -- | -- | -- | -- |
| 96.59 | 0.46 | 9.84 | -0.422 | 0.408 | -- | -- | -- | -0.147 | 12.9 | -- | -- | -- | -- |
| 64.13 | 0.373 | 9.9 | -0.739 | -- | 1.49 | -- | -- | -0.386 | -- | 17.6 | 18 | -- | -- |
| 74.22 | 0.401 | 9.87 | -- | 0.527 | 1.27 | -- | -- | -0.298 | 8.94 | 19.31 | 376 | -- | -- |
| 106.98 | 0.483 | 9.84 | -0.437 | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
| 101.27 | 0.471 | 9.83 | -- | 0.415 | -- | -- | -- | -0.1 | 12.9 | -- | -- | -- | -- |
| 77.19 | 0.409 | 9.87 | -- | -- | 1.22 | -- | -- | -0.277 | -- | 19.29 | 3 | -- | -- |
| 112.01 | 0.494 | 9.83 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 2 | 57.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 34 | 58.66 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 39 | 58.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 42 | 58.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 50 | 59.12 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 68 | 59.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 78 | 59.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 79 | 59.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 91 | 59.72 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 173 | 60.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 213 | 61.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 222 | 61.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 261 | 61.28 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 273 | 61.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 276 | 61.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 282 | 61.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 285 | 61.42 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 304 | 61.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 309 | 61.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 336 | 61.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 348 | 61.76 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 388 | 61.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 419 | 62.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 444 | 62.15 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 466 | 62.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 472 | 62.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 497 | 62.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 522 | 62.47 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 528 | 62.49 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 559 | 62.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 585 | 62.65 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 617 | 62.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 632 | 62.77 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 637 | 62.78 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 645 | 62.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 663 | 62.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 664 | 62.85 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 676 | 62.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 776 | 63.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 811 | 63.16 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 887 | 63.32 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 901 | 63.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 975 | 63.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |