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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0132700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.01 (0.0348) R2 : 0.583
β1 : -1.28 (0.127) R2dD : 0.0967 R2D : 0.000586
β2 : 1.85 (0.0888) R2dC : 0.401 R2C : 0.372
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.837 (0.0741) R2dN8 : 0.156 R2N8 : 0.0839
σ : 0.653
deviance : 194.41
__
_____
C
peak time of C : 19.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.16 0.615 5.82 0.178 1.89 -0.0616 -0.132 5.88 -0.493 19.7 24.7 2967 -- --
185.71 0.635 6.06 -1.35 1.82 0.769 -0.152 -- -0.951 19.6 25.31 3638 -- --
170.93 0.609 5.81 0.244 1.89 -0.142 -- 6.36 -0.483 19.6 25.75 2868 -- --
179.5 0.624 6.07 -1.61 1.86 0.628 -- -- -1.1 19.7 25.53 12273 -- --
347.82 0.869 5.79 -0.0557 -- 0.408 -- 6.6 -0.551 -- 25.57 2125 -- --
194.39 0.654 6.01 -1.29 1.85 -- -0.0919 -- -0.837 19.8 -- -- -- --
194.41 0.653 6.01 -1.28 1.85 -- -- -- -0.837 19.8 -- -- -- --
288.83 0.792 6 -1.88 -- 1.73 -- -- -1.02 -- 24.5 673 -- --
233.83 0.712 6 -- 1.86 0.308 -- -- -0.805 19.7 31 13021 -- --
380.19 0.911 5.97 -1.31 -- -- -- -- -0.863 -- -- -- -- --
237.86 0.721 5.98 -- 1.86 -- -- -- -0.694 19.7 -- -- -- --
357.83 0.881 5.95 -- -- 1.55 -- -- -0.818 -- 24.69 626 -- --
425.21 0.962 5.93 -- -- -- -- -- -0.718 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.18 wind 9.0 43200 < th dose independent rect. 20 9
6 164.24 wind 9.0 43200 > th dose independent rect. 20 10
8 164.35 wind 9.0 43200 > th dose dependent rect. 20 10
27 165.34 wind 9.0 43200 > th dose dependent rect. 17 13
28 165.40 atmosphere 1000.0 270 > th dose independent rect. 9 22
39 165.92 wind 9.0 43200 > th dose independent rect. 20 4
55 166.23 wind 7.0 43200 > th dose dependent rect. 20 5
56 166.25 atmosphere 1000.0 270 > th dose independent rect. 11 19
68 166.50 atmosphere 1000.0 10 > th dose independent rect. 13 19
98 167.16 wind 9.0 43200 > th dose independent rect. 17 15
121 167.58 wind 5.0 43200 > th dose independent rect. 20 2
126 167.73 temperature 30.0 14400 > th dose independent rect. 18 15
131 167.82 wind 5.0 43200 < th dose independent rect. 20 2
138 167.89 wind 9.0 43200 > th dose dependent rect. 17 7
141 167.98 temperature 30.0 14400 > th dose dependent rect. 18 15
161 168.26 temperature 30.0 14400 < th dose independent rect. 18 15
177 168.51 atmosphere 1000.0 270 > th dose independent rect. 11 10
189 168.64 atmosphere 1000.0 90 > th dose independent rect. 1 22
193 168.69 wind 9.0 43200 < th dose independent rect. 17 18
204 168.82 precipitation 0.1 43200 > th dose dependent rect. 14 4
211 168.92 temperature 25.0 4320 < th dose independent rect. 4 3
221 169.05 temperature 25.0 4320 > th dose independent rect. 4 3
240 169.25 atmosphere 1000.0 270 > th dose independent rect. 1 20
252 169.43 wind 9.0 43200 > th dose independent rect. 17 8
275 169.74 precipitation 0.1 43200 > th dose independent rect. 17 2
278 169.77 temperature 30.0 1440 > th dose independent rect. 18 21
293 169.90 temperature 30.0 1440 > th dose independent rect. 9 6
319 169.97 wind 5.0 43200 > th dose dependent rect. 6 1
320 169.97 temperature 30.0 14400 > th dose dependent rect. 18 1
335 169.98 wind 9.0 43200 > th dose dependent rect. 17 1
338 170.00 precipitation 0.1 43200 < th dose independent rect. 17 2
340 170.00 precipitation 0.1 43200 < th dose dependent rect. 17 2
344 170.02 wind 5.0 43200 > th dose independent rect. 6 2
345 170.02 temperature 25.0 4320 > th dose independent rect. 1 6
346 170.02 temperature 30.0 14400 < th dose independent rect. 3 6
349 170.04 wind 9.0 43200 < th dose independent sin 11 NA
355 170.07 temperature 30.0 14400 > th dose independent rect. 18 1
380 170.14 temperature 30.0 1440 > th dose independent rect. 12 2
382 170.16 wind 5.0 14400 < th dose independent rect. 8 1
399 170.19 atmosphere 1000.0 90 > th dose independent rect. 13 10
402 170.21 temperature 30.0 1440 > th dose independent sin 6 NA
405 170.25 wind 9.0 43200 > th dose independent sin 11 NA
416 170.36 temperature 30.0 14400 < th dose independent rect. 20 13
432 170.45 precipitation 0.1 43200 > th dose dependent rect. 17 5
435 170.47 wind 5.0 43200 < th dose independent rect. 6 2
447 170.54 wind 5.0 14400 > th dose dependent rect. 8 1
452 170.56 wind 5.0 14400 > th dose independent rect. 8 1
458 170.60 temperature 25.0 4320 > th dose dependent rect. 5 2
461 170.61 atmosphere 1000.0 10 > th dose independent rect. 2 21
468 170.66 wind 5.0 43200 > th dose independent rect. 6 4
475 170.69 temperature 30.0 1440 < th dose independent rect. 9 5
482 170.72 humidity 70.0 1440 > th dose independent rect. 17 1
485 170.74 wind 5.0 43200 > th dose independent rect. 17 19
486 170.75 wind 5.0 43200 < th dose independent rect. 6 4
499 170.78 wind 9.0 43200 > th dose dependent sin 12 NA
508 170.82 temperature 30.0 1440 < th dose independent sin 7 NA
509 170.82 temperature 30.0 1440 > th dose independent rect. 10 1
511 170.82 radiation 10.0 90 < th dose independent rect. 19 23
514 170.84 temperature 30.0 1440 < th dose independent rect. 9 2
533 170.94 humidity 80.0 14400 > th dose independent rect. 17 1
539 170.95 temperature 30.0 1440 < th dose independent rect. 1 13
542 170.96 temperature 30.0 1440 < th dose independent rect. 22 16
548 170.98 atmosphere 995.0 43200 < th dose independent rect. 5 10
550 170.98 temperature 30.0 1440 < th dose independent rect. 19 19
559 171.02 atmosphere 995.0 270 > th dose dependent rect. 11 10
584 171.15 atmosphere 1000.0 43200 < th dose dependent rect. 9 1
594 171.19 temperature 30.0 14400 > th dose independent rect. 8 1
595 171.19 humidity 80.0 14400 < th dose independent rect. 17 1
655 171.34 precipitation 0.1 43200 > th dose independent rect. 17 4
682 171.42 atmosphere 995.0 43200 > th dose independent rect. 12 1
691 171.45 atmosphere 995.0 43200 < th dose dependent rect. 12 12
697 171.48 temperature 30.0 1440 < th dose dependent rect. 18 1
703 171.50 precipitation 0.1 43200 < th dose independent rect. 17 4
704 171.50 humidity 70.0 1440 > th dose independent rect. 16 16
705 171.50 precipitation 0.1 43200 < th dose dependent rect. 17 4
711 171.55 atmosphere 1000.0 30 > th dose independent rect. 5 18
720 171.59 atmosphere 995.0 43200 > th dose independent rect. 4 11
734 171.63 temperature 10.0 1440 > th dose dependent rect. 9 12
736 171.64 atmosphere 1000.0 30 > th dose independent rect. 5 23
753 171.73 wind 1.0 14400 < th dose independent rect. 2 4
756 171.73 wind 1.0 10 > th dose dependent rect. 4 3
762 171.74 temperature 30.0 1440 > th dose independent rect. 18 17
772 171.77 atmosphere 995.0 43200 < th dose independent rect. 2 14
776 171.78 wind 5.0 43200 > th dose independent sin 11 NA
783 171.80 temperature 30.0 14400 < th dose independent rect. 18 6
784 171.81 wind 5.0 43200 < th dose independent sin 10 NA
788 171.81 temperature 15.0 1440 > th dose dependent rect. 18 1
829 171.88 radiation 20.0 90 < th dose dependent rect. 19 23
834 171.90 humidity 70.0 1440 > th dose independent rect. 16 3
846 171.92 humidity 70.0 1440 > th dose independent rect. 16 8
851 171.93 humidity 70.0 1440 > th dose independent rect. 16 6
870 171.98 wind 1.0 90 > th dose independent rect. 4 2
873 171.98 temperature 30.0 1440 < th dose independent rect. 22 13
877 172.01 temperature 30.0 1440 < th dose independent rect. 24 11
889 172.03 temperature 30.0 14400 > th dose dependent rect. 8 1
907 172.04 temperature 30.0 14400 < th dose dependent rect. 21 1
917 172.06 temperature 10.0 14400 > th dose dependent rect. 21 1
932 172.09 temperature 30.0 1440 < th dose independent rect. 19 16
940 172.12 precipitation 0.1 43200 > th dose dependent rect. 20 2
959 172.16 atmosphere 995.0 43200 > th dose independent rect. 1 15
962 172.16 temperature 10.0 1440 > th dose dependent rect. 9 6
966 172.17 atmosphere 995.0 43200 > th dose independent rect. 23 17
982 172.20 temperature 30.0 14400 < th dose independent rect. 18 10
983 172.20 temperature 10.0 1440 > th dose dependent rect. 10 4
998 172.25 atmosphere 995.0 90 > th dose dependent rect. 13 10