Os08g0131000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0131000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.52 | 0.505 | 4.17 | 1.55 | 2.33 | -1.15 | 2.27 | 0.366 | 0.306 | 19.8 | 29.7 | 310 | -- | -- |
| 115.23 | 0.5 | 4.17 | 1.58 | 2.31 | -1.11 | 2.28 | -- | 0.292 | 19.8 | 29.54 | 310 | -- | -- |
| 129.41 | 0.53 | 4.15 | 1.64 | 2.29 | -1.1 | -- | -1.32 | 0.339 | 19.7 | 29.7 | 332 | -- | -- |
| 129.76 | 0.531 | 4.17 | 1.52 | 2.3 | -1.23 | -- | -- | 0.313 | 19.8 | 29.6 | 312 | -- | -- |
| 308.47 | 0.818 | 4.18 | 1.26 | -- | -2.25 | -- | -0.343 | -0.0142 | -- | 27.5 | 503 | -- | -- |
| 143.51 | 0.562 | 4.18 | 1.76 | 2.7 | -- | 2.85 | -- | 0.305 | 19.4 | -- | -- | -- | -- |
| 165.59 | 0.603 | 4.18 | 1.7 | 2.7 | -- | -- | -- | 0.311 | 19.3 | -- | -- | -- | -- |
| 297.51 | 0.803 | 4.21 | 1.23 | -- | -2.53 | -- | -- | -0.00845 | -- | 28.27 | 542 | -- | -- |
| 188.6 | 0.64 | 4.21 | -- | 2.29 | -1.42 | -- | -- | 0.195 | 19.8 | 29.61 | 308 | -- | -- |
| 554.5 | 1.1 | 4.11 | 1.65 | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
| 241.71 | 0.727 | 4.22 | -- | 2.69 | -- | -- | -- | 0.122 | 19.4 | -- | -- | -- | -- |
| 332.98 | 0.85 | 4.21 | -- | -- | -2.62 | -- | -- | -0.185 | -- | 28.3 | 539 | -- | -- |
| 626.66 | 1.17 | 4.15 | -- | -- | -- | -- | -- | 0.0827 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 9 |
| 3 | 112.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 11 |
| 7 | 112.99 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 9 | 113.41 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 13 |
| 38 | 114.11 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 22 |
| 47 | 114.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 168 | 116.08 | temperature | 25 | 270 | > th | dose dependent | sin | 21 | NA |
| 177 | 116.24 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 179 | 116.25 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 7 |
| 219 | 116.66 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 7 |
| 221 | 116.71 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 9 |
| 224 | 116.73 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 226 | 116.74 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 9 |
| 230 | 116.76 | temperature | 30 | 270 | > th | dose independent | sin | 23 | NA |
| 232 | 116.79 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 266 | 116.99 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 14 |
| 272 | 117.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 3 |
| 281 | 117.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 321 | 117.41 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 329 | 117.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 334 | 117.52 | temperature | 25 | 90 | > th | dose dependent | sin | 18 | NA |
| 363 | 117.68 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 384 | 117.83 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 483 | 117.88 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 600 | 118.46 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 637 | 118.58 | wind | 5 | 720 | > th | dose independent | rect. | 9 | 3 |
| 644 | 118.62 | wind | 5 | 720 | > th | dose independent | rect. | 11 | 1 |
| 691 | 118.87 | temperature | 30 | 720 | > th | dose independent | rect. | 10 | 3 |
| 698 | 118.89 | wind | 3 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 794 | 119.40 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 19 |
| 823 | 119.48 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 885 | 119.67 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 911 | 119.72 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 912 | 119.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 929 | 119.80 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 23 |
| 980 | 120.07 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 984 | 120.09 | temperature | 10 | 10 | > th | dose dependent | sin | 16 | NA |