Os08g0130400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AMP-dependent synthetase and ligase domain containing protein.
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Os08g0130400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AMP-dependent synthetase and ligase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 354.95 | 0.885 | 8.75 | -2.48 | 1.3 | 0.803 | 3.56 | 3.98 | -0.937 | 21 | 20.89 | 1274 | -- | -- |
| 386.63 | 0.916 | 8.88 | -3.26 | 1.28 | 0.485 | 3.68 | -- | -1.16 | 21 | 24.77 | 2461 | -- | -- |
| 371.29 | 0.897 | 8.74 | -2.06 | 1.28 | 0.365 | -- | 4.34 | -0.822 | 20.4 | 21.9 | 852 | -- | -- |
| 430.92 | 0.967 | 8.81 | -3.69 | 1.46 | 0.641 | -- | -- | -1.08 | 20.4 | 29.61 | 22602 | -- | -- |
| 458.55 | 0.997 | 8.71 | -2.06 | -- | 0.699 | -- | 4.79 | -0.877 | -- | 21.9 | 847 | -- | -- |
| 391.43 | 0.928 | 8.85 | -3.15 | 1.32 | -- | 3.87 | -- | -1.02 | 21.2 | -- | -- | -- | -- |
| 441.31 | 0.984 | 8.85 | -3.28 | 1.34 | -- | -- | -- | -1.02 | 20.5 | -- | -- | -- | -- |
| 484.6 | 1.03 | 8.81 | -3.26 | -- | 1.33 | -- | -- | -1.22 | -- | 26.3 | 753 | -- | -- |
| 515.09 | 1.06 | 8.66 | -- | 1.36 | -2.44 | -- | -- | -0.155 | 20.6 | 17.3 | 47520 | -- | -- |
| 542.46 | 1.09 | 8.82 | -3.28 | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
| 724.04 | 1.26 | 8.77 | -- | 1.36 | -- | -- | -- | -0.657 | 20.3 | -- | -- | -- | -- |
| 617.13 | 1.16 | 8.63 | -- | -- | -2.44 | -- | -- | -0.196 | -- | 16.73 | 47520 | -- | -- |
| 826.4 | 1.34 | 8.73 | -- | -- | -- | -- | -- | -0.67 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 343.40 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 5 | 344.26 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 6 | 344.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 7 | 344.49 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 9 | 344.86 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 10 | 345.02 | wind | 1 | 43200 | > th | dose independent | rect. | 15 | 12 |
| 13 | 345.66 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 15 | 345.95 | wind | 1 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 17 | 346.12 | wind | 1 | 43200 | > th | dose independent | sin | 16 | NA |
| 19 | 346.17 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 23 | 346.55 | wind | 1 | 43200 | < th | dose independent | sin | 16 | NA |
| 26 | 346.58 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 30 | 346.76 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 33 | 346.85 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 56 | 347.66 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 68 | 348.07 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 69 | 348.08 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 72 | 348.11 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 78 | 348.31 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 79 | 348.32 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 107 | 349.27 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 113 | 349.47 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 122 | 349.69 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 13 |
| 150 | 350.49 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 151 | 350.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 153 | 350.59 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 208 | 351.62 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 225 | 351.85 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 276 | 352.63 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 9 | 3 |
| 288 | 352.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 293 | 352.96 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 17 |
| 315 | 353.42 | wind | 1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 336 | 353.75 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 340 | 353.83 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 346 | 353.86 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 8 |
| 361 | 354.02 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 390 | 354.33 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 415 | 354.66 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 433 | 354.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 462 | 355.27 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 485 | 355.47 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 489 | 355.50 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 516 | 355.82 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 14 |
| 564 | 356.28 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 10 | 5 |
| 571 | 356.35 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 10 | 4 |
| 574 | 356.39 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 625 | 356.87 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 10 | 4 |
| 642 | 356.99 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 12 |
| 661 | 357.10 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 666 | 357.13 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 686 | 357.28 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 717 | 357.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 772 | 358.05 | atmosphere | 1000 | 30 | > th | dose independent | sin | 23 | NA |
| 830 | 358.48 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 875 | 358.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 7 |
| 888 | 358.79 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 899 | 358.85 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 909 | 358.89 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 15 |
| 916 | 358.94 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 11 | 1 |
| 989 | 359.34 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 996 | 359.39 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 15 |
| 1000 | 359.40 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 11 |