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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0128700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0394) R2 : 0.125
β1 : 0.875 (0.155) R2dD : 0.0969 R2D : -0.0891
β2 : -- (--) R2dC : -- R2C : --
β3 : 28.3 (3.87) R2dE : 7.06 R2E : -6.26
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 128 (18.6) R2dD*E : 6.32 R2D*E : -6.93
γ1 : -0.037 (0.0733) R2dN8 : 0.000656 R2N8 : -0.0368
σ : 0.641
deviance : 189.33
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_____
C
peak time of C : --
E
wheather : wind
threshold : 5.045
memory length : 275
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.13
open length of G : 4.97

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.34 0.645 2.94 0.861 0.104 28.3 -0.314 128 -0.0366 21.6 5.043 275 2.1 4.98
211.96 0.683 2.81 0.217 0.0145 1.12 -0.606 -- -0.0406 19.2 5.166 13 2.12 7.68
188.68 0.64 2.94 0.872 0.11 28.3 -- 128 -0.0343 21.1 5.038 275 2.12 4.97
209.4 0.678 2.81 0.219 0.105 1.46 -- -- -0.0401 0.281 4.15 21 4.25 5.42
189.33 0.641 2.94 0.875 -- 28.3 -- 128 -0.037 -- 5.045 275 2.13 4.97
213.87 0.686 2.81 0.203 0.01 -- 0.559 -- -0.05 7.01 -- -- -- --
214.04 0.685 2.81 0.21 0.103 -- -- -- -0.0534 1.64 -- -- -- --
206.07 0.669 2.81 0.244 -- 2.84 -- -- -0.037 -- 5.2 29 4.3 5.07
206.74 0.67 2.81 -- 0.107 2.85 -- -- -0.0652 24 5.6 11 4.02 5.14
214.69 0.685 2.81 0.214 -- -- -- -- -0.0512 -- -- -- -- --
215.2 0.686 2.82 -- 0.106 -- -- -- -0.0768 1.7 -- -- -- --
207.44 0.671 2.81 -- -- 2.79 -- -- -0.0653 -- 5.6 11 4.49 5.2
215.89 0.686 2.82 -- -- -- -- -- -0.0749 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.62 wind 5.0 270 > th dose independent rect. 2 5
2 188.82 wind 5.0 270 > th dose dependent rect. 2 5
19 198.93 atmosphere 1005.0 10 < th dose independent rect. 4 2
22 199.09 atmosphere 1005.0 90 < th dose independent rect. 4 1
38 200.11 temperature 30.0 10 > th dose independent rect. 18 1
55 200.39 humidity 70.0 10 < th dose independent rect. 18 2
83 200.81 temperature 30.0 90 > th dose dependent rect. 17 2
102 201.33 atmosphere 995.0 10 > th dose independent sin 8 NA
124 201.67 radiation 10.0 90 > th dose dependent rect. 17 1
141 201.93 atmosphere 1000.0 10 < th dose independent rect. 17 1
163 201.93 atmosphere 1000.0 10 < th dose dependent rect. 17 1
186 202.03 radiation 10.0 90 > th dose independent rect. 17 1
199 202.03 humidity 70.0 10 < th dose dependent rect. 18 2
212 202.05 temperature 30.0 10 > th dose dependent rect. 18 1
228 202.11 atmosphere 995.0 10 < th dose dependent sin 8 NA
249 202.13 atmosphere 995.0 10 < th dose independent sin 8 NA
695 203.29 atmosphere 995.0 270 > th dose independent rect. 3 23
707 203.66 humidity 70.0 10 > th dose independent rect. 7 19
739 204.18 wind 5.0 30 > th dose independent rect. 5 4
741 204.21 atmosphere 995.0 30 > th dose independent rect. 14 12
743 204.21 wind 5.0 10 > th dose dependent rect. 5 3
746 204.23 atmosphere 995.0 30 > th dose independent rect. 23 23
756 204.29 wind 5.0 10 > th dose independent rect. 18 1
767 204.40 atmosphere 1005.0 270 < th dose independent rect. 2 1
770 204.41 radiation 10.0 10 < th dose dependent rect. 7 1
786 204.54 temperature 30.0 10 > th dose independent sin 12 NA
794 204.62 humidity 50.0 90 > th dose dependent rect. 7 19
832 204.82 atmosphere 995.0 90 > th dose independent rect. 6 23
838 204.95 radiation 10.0 10 < th dose independent rect. 8 1
862 205.01 temperature 30.0 90 < th dose independent rect. 6 20
863 205.01 wind 3.0 90 > th dose dependent rect. 6 1
871 205.07 wind 3.0 90 < th dose dependent rect. 12 1
875 205.11 temperature 30.0 90 > th dose dependent rect. 17 21
880 205.16 precipitation 0.1 720 < th dose independent rect. 20 15
882 205.16 precipitation 0.1 720 < th dose dependent rect. 20 15
889 205.21 temperature 30.0 270 < th dose independent rect. 4 22
890 205.24 wind 1.0 30 > th dose independent rect. 7 9
894 205.29 temperature 30.0 10 < th dose independent rect. 7 19
902 205.34 atmosphere 995.0 30 > th dose independent rect. 7 19
905 205.35 humidity 50.0 10 > th dose independent rect. 7 5
911 205.37 atmosphere 1000.0 10 < th dose dependent rect. 13 6
926 205.48 wind 1.0 90 > th dose independent rect. 6 11
932 205.50 humidity 50.0 90 > th dose dependent rect. 7 5
938 205.52 humidity 70.0 10 > th dose independent rect. 10 16
940 205.53 wind 3.0 90 > th dose independent rect. 6 1
943 205.54 wind 5.0 10 > th dose independent rect. 7 2
968 205.62 temperature 10.0 90 > th dose dependent rect. 11 12
972 205.64 precipitation 0.1 90 > th dose independent rect. 7 1
978 205.64 atmosphere 995.0 10 > th dose independent rect. 7 11
980 205.64 precipitation 0.1 90 > th dose dependent rect. 7 1
988 205.66 wind 7.0 90 > th dose independent rect. 16 1
990 205.66 wind 5.0 720 < th dose independent rect. 23 9