Os08g0128200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0128200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.84 | 0.243 | 10.7 | 0.767 | 1.08 | -1.03 | -0.702 | 0.0456 | 0.286 | 8.15 | 10.57 | 14 | -- | -- |
| 26.84 | 0.241 | 10.7 | 0.769 | 1.08 | -1.03 | -0.741 | -- | 0.283 | 8.15 | 10.57 | 14 | -- | -- |
| 27.72 | 0.245 | 10.7 | 0.759 | 1.07 | -1.04 | -- | 0.372 | 0.279 | 8.12 | 10.47 | 16 | -- | -- |
| 28.52 | 0.249 | 10.7 | 0.749 | 1.07 | -1.03 | -- | -- | 0.28 | 8.14 | 10.27 | 14 | -- | -- |
| 67.02 | 0.381 | 10.8 | 0.758 | -- | -1.46 | -- | 0.436 | 0.29 | -- | 8.134 | 8 | -- | -- |
| 43.88 | 0.311 | 10.7 | 0.759 | 1.98 | -- | -0.604 | -- | 0.338 | 10.1 | -- | -- | -- | -- |
| 45.31 | 0.315 | 10.7 | 0.735 | 1.98 | -- | -- | -- | 0.337 | 10.1 | -- | -- | -- | -- |
| 67.2 | 0.382 | 10.8 | 0.773 | -- | -1.47 | -- | -- | 0.317 | -- | 7.283 | 4 | -- | -- |
| 43.12 | 0.306 | 10.7 | -- | 1.15 | -0.964 | -- | -- | 0.226 | 8.36 | 11.73 | 14 | -- | -- |
| 282.21 | 0.785 | 10.8 | 0.71 | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
| 59.56 | 0.361 | 10.7 | -- | 1.98 | -- | -- | -- | 0.255 | 10 | -- | -- | -- | -- |
| 82.2 | 0.422 | 10.8 | -- | -- | -1.47 | -- | -- | 0.259 | -- | 7.157 | 4 | -- | -- |
| 295.49 | 0.802 | 10.8 | -- | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.49 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 3 | 26.86 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 4 | 26.90 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 11 | 27.04 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 12 | 27.05 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 18 |
| 13 | 27.05 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 15 | 27.08 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 31 | 27.55 | radiation | 1.0 | 30 | > th | dose independent | sin | 1 | NA |
| 35 | 27.65 | radiation | 1.0 | 30 | < th | dose independent | sin | 1 | NA |
| 54 | 27.91 | radiation | 10.0 | 30 | < th | dose dependent | sin | 2 | NA |
| 56 | 27.93 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 64 | 28.26 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 12 |
| 115 | 28.99 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 137 | 29.36 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 197 | 29.96 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 234 | 30.39 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 1 | 18 |
| 275 | 30.82 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 7 |
| 318 | 31.10 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 11 |
| 373 | 31.43 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 382 | 31.49 | radiation | 10.0 | 10 | < th | dose independent | rect. | 12 | 18 |
| 460 | 31.83 | radiation | 10.0 | 10 | < th | dose independent | rect. | 10 | 20 |
| 540 | 32.12 | radiation | 10.0 | 10 | < th | dose independent | rect. | 8 | 22 |
| 551 | 32.14 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 674 | 32.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 21 |
| 679 | 32.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 699 | 32.65 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 1 | 11 |
| 711 | 32.67 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 1 | 9 |
| 716 | 32.69 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 1 | 7 |
| 751 | 32.78 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 11 |
| 760 | 32.80 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 14 |
| 779 | 32.86 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 24 | 3 |
| 847 | 33.03 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 20 |
| 849 | 33.03 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 851 | 33.04 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 21 |
| 873 | 33.12 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 14 |
| 874 | 33.12 | humidity | 90.0 | 30 | > th | dose independent | rect. | 1 | 18 |
| 905 | 33.13 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 1 | 5 |
| 918 | 33.16 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 20 |
| 949 | 33.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 10 |
| 951 | 33.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 10 |
| 956 | 33.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 957 | 33.22 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 3 |
| 982 | 33.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 3 |