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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0126500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.03 (0.0361) R2 : 0.573
β1 : 1.09 (0.14) R2dD : 0.0655 R2D : -0.0422
β2 : 4.13 (0.17) R2dC : 2 R2C : -0.602
β3 : -4.68 (0.251) R2dE : 1.22 R2E : -1.49
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.44 (0.08) R2dN8 : 0.0454 R2N8 : -0.0411
σ : 0.674
deviance : 209.39
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_____
C
peak time of C : 20.9
E
wheather : temperature
threshold : 9.732
memory length : 958
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 17.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.14 0.653 3.91 1.78 4 -4.57 -2.16 7.17 0.652 21 15.76 737 15.2 --
208.17 0.672 4.01 1.15 3.71 -4.39 0.577 -- 0.492 20.9 12.47 963 18 --
198.68 0.656 3.86 1.98 3.49 -4.29 -- 6.13 0.767 20.9 18.01 863 16.6 --
209.39 0.674 4.03 1.09 4.13 -4.68 -- -- 0.44 20.9 9.732 958 17.7 --
251.87 0.739 3.71 2.73 -- -3.98 -- 5.13 1 -- -3.821 3247 23.2 --
366.35 0.897 4.04 0.203 1.44 -- -0.172 -- 0.0591 21.6 -- -- -- --
366.46 0.896 4.04 0.209 1.44 -- -- -- 0.0594 21.6 -- -- -- --
247.54 0.733 3.88 1.95 -- -4.72 -- -- 0.583 -- -35.8 4537 21.8 --
235.87 0.715 4.07 -- 3.83 -4.1 -- -- 0.259 21.3 11.66 881 16.2 --
489.47 1.03 4 0.221 -- -- -- -- 0.0563 -- -- -- -- --
367.62 0.897 4.04 -- 1.44 -- -- -- 0.0361 21.6 -- -- -- --
280.55 0.78 3.94 -- -- -3.33 -- -- 0.286 -- -133.8 4451 21.3 --
490.76 1.03 4 -- -- -- -- -- 0.0318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.98 temperature 15 720 > th dose dependent rect. 6 18
4 194.33 temperature 15 720 > th dose dependent sin 21 NA
85 202.16 temperature 30 720 < th dose dependent rect. 7 16
96 202.78 temperature 30 720 < th dose dependent sin 21 NA
106 203.59 temperature 15 720 > th dose dependent rect. 10 8
124 204.65 temperature 30 720 < th dose dependent rect. 9 12
339 212.61 temperature 20 720 > th dose dependent no NA NA
359 213.54 temperature 20 720 > th dose dependent rect. 21 23
362 213.72 radiation 30 14400 < th dose independent rect. 7 1
379 214.29 radiation 30 14400 < th dose independent rect. 20 12
388 214.48 radiation 30 14400 < th dose independent rect. 5 3
402 214.74 radiation 30 14400 < th dose independent rect. 23 9
405 214.76 radiation 30 14400 < th dose independent rect. 3 5
447 216.05 temperature 30 720 < th dose dependent rect. 11 8
498 217.39 temperature 20 720 > th dose dependent rect. 16 23
501 217.42 radiation 1 14400 > th dose independent rect. 8 22
516 217.74 radiation 1 14400 > th dose independent rect. 17 23
522 217.77 radiation 1 14400 > th dose independent rect. 15 22
527 217.84 radiation 1 43200 > th dose independent rect. 18 11
554 217.99 radiation 1 14400 < th dose independent rect. 18 22
574 218.10 radiation 30 14400 > th dose independent rect. 7 1
592 218.12 radiation 1 14400 > th dose independent rect. 8 11
595 218.12 radiation 1 14400 > th dose independent rect. 5 14
616 218.14 radiation 1 14400 > th dose independent no NA NA
690 218.34 radiation 1 14400 < th dose independent rect. 15 22
693 218.35 radiation 1 14400 > th dose independent sin 1 NA
694 218.35 radiation 1 14400 < th dose independent rect. 18 20
699 218.36 radiation 1 14400 < th dose independent rect. 8 22
704 218.36 radiation 1 14400 < th dose dependent rect. 15 20
711 218.38 radiation 1 14400 < th dose dependent rect. 8 22
758 218.63 radiation 1 14400 < th dose independent sin 2 NA
776 218.70 radiation 1 14400 < th dose independent rect. 3 22
780 218.71 radiation 1 14400 < th dose independent rect. 5 18
781 218.71 radiation 1 14400 < th dose independent rect. 3 19
783 218.71 radiation 1 14400 < th dose independent rect. 5 20
791 218.71 radiation 1 14400 < th dose independent rect. 5 23
793 218.71 radiation 1 14400 < th dose dependent rect. 18 23
794 218.72 radiation 1 14400 < th dose independent no NA NA
803 218.72 radiation 1 14400 < th dose independent rect. 24 22
804 218.72 radiation 1 14400 < th dose independent rect. 20 23
826 218.75 radiation 1 14400 < th dose independent rect. 5 14
893 218.96 radiation 40 43200 < th dose dependent rect. 18 7
894 218.96 temperature 30 270 < th dose dependent rect. 12 23
926 219.08 atmosphere 1005 43200 > th dose dependent rect. 17 1
928 219.08 radiation 1 14400 < th dose dependent rect. 8 16
931 219.09 radiation 1 14400 < th dose dependent rect. 8 14
932 219.09 radiation 1 14400 < th dose dependent rect. 5 19
937 219.10 radiation 1 14400 < th dose dependent rect. 5 17
943 219.11 temperature 30 270 < th dose dependent rect. 10 23
950 219.12 radiation 1 14400 < th dose dependent rect. 5 23
952 219.13 radiation 1 14400 < th dose dependent rect. 8 11
953 219.13 radiation 1 14400 < th dose dependent rect. 5 14
972 219.18 radiation 1 14400 < th dose dependent rect. 3 19
989 219.21 radiation 1 14400 < th dose dependent no NA NA
997 219.21 radiation 1 14400 < th dose dependent rect. 20 23
998 219.21 radiation 1 14400 < th dose dependent rect. 23 23