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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0125200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Concanavalin A-like lectin/glucanase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0207) R2 : 0.0337
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.174 (0.0436) R2dN8 : 0.0435 R2N8 : 0.0337
σ : 0.39
deviance : 69.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.1 0.382 3.25 -0.0657 0.124 9.65 -0.179 -25 0.195 6.09 49.43 11 -- --
68.57 0.389 3.18 0.164 0.0895 -0.0314 -0.28 -- 0.189 6.83 46.35 175 -- --
66.12 0.379 3.25 -0.0615 0.12 9.68 -- -25.1 0.195 5.42 49.34 11 -- --
68.35 0.385 3.18 0.147 0.106 0.27 -- -- 0.193 6.37 52.11 65 -- --
66.87 0.381 3.25 -0.0543 -- 9.69 -- -25.2 0.197 -- 49.27 11 -- --
68.57 0.388 3.18 0.162 0.0893 -- -0.282 -- 0.189 6.84 -- -- -- --
68.7 0.388 3.18 0.156 0.0967 -- -- -- 0.189 5.42 -- -- -- --
68.93 0.387 3.18 0.145 -- 0.226 -- -- 0.196 -- 52 72 -- --
68.73 0.386 3.18 -- 0.118 0.345 -- -- 0.179 5.04 52 72 -- --
69.18 0.389 3.18 0.159 -- -- -- -- 0.192 -- -- -- -- --
69.34 0.39 3.18 -- 0.0993 -- -- -- 0.172 5.36 -- -- -- --
69.45 0.388 3.18 -- -- 0.258 -- -- 0.181 -- 52 58 -- --
69.85 0.39 3.18 -- -- -- -- -- 0.174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.11 wind 1.0 30 < th dose independent rect. 2 1
3 63.20 temperature 25.0 30 < th dose independent rect. 2 1
4 63.23 wind 3.0 30 < th dose dependent rect. 2 1
9 63.29 temperature 30.0 30 < th dose dependent rect. 2 1
11 63.31 humidity 80.0 30 > th dose independent rect. 2 1
13 63.31 atmosphere 1015.0 30 < th dose dependent rect. 2 1
17 63.32 temperature 10.0 30 > th dose independent rect. 2 1
20 63.32 humidity 50.0 30 > th dose independent rect. 2 1
23 63.32 atmosphere 995.0 30 > th dose independent rect. 2 1
24 63.32 atmosphere 1010.0 30 < th dose independent rect. 2 1
26 63.32 radiation 1.0 30 < th dose independent rect. 2 1
31 63.32 precipitation 0.1 30 < th dose independent rect. 2 1
32 63.32 temperature 10.0 30 > th dose independent rect. 3 23
33 63.32 radiation 1.0 30 < th dose dependent rect. 2 1
38 63.32 precipitation 0.1 30 < th dose dependent rect. 2 1
39 63.33 humidity 50.0 30 > th dose dependent rect. 2 1
42 63.36 temperature 10.0 30 > th dose dependent rect. 2 1
44 63.37 atmosphere 995.0 30 > th dose dependent rect. 2 1
57 63.55 wind 9.0 30 < th dose independent rect. 3 23
94 63.78 wind 1.0 30 > th dose independent rect. 2 1
107 64.33 radiation 10.0 10 > th dose independent rect. 17 14
108 64.37 precipitation 0.1 30 < th dose independent rect. 3 23
109 64.37 precipitation 0.1 30 < th dose dependent rect. 3 23
111 64.60 radiation 10.0 10 > th dose dependent rect. 17 14
112 64.62 humidity 50.0 30 > th dose independent rect. 3 23
114 64.95 radiation 10.0 10 > th dose independent rect. 17 1
127 64.95 humidity 50.0 10 < th dose dependent rect. 17 19
131 64.99 humidity 50.0 10 < th dose independent rect. 17 21
133 65.00 humidity 50.0 10 < th dose independent rect. 17 19
137 65.09 humidity 50.0 10 < th dose independent rect. 17 1
156 65.14 humidity 50.0 10 < th dose dependent rect. 17 1
174 65.18 radiation 10.0 10 > th dose dependent rect. 17 1
207 65.46 humidity 50.0 10 < th dose dependent sin 9 NA
213 65.58 temperature 30.0 14400 > th dose independent rect. 10 1
214 65.58 atmosphere 995.0 10 > th dose independent rect. 3 23
215 65.59 temperature 30.0 14400 < th dose independent rect. 10 1
216 65.59 temperature 30.0 14400 > th dose independent rect. 17 18
217 65.59 temperature 30.0 14400 > th dose dependent rect. 17 1
234 65.62 temperature 30.0 14400 > th dose independent rect. 17 16
237 65.63 temperature 30.0 14400 < th dose independent rect. 17 18
239 65.65 humidity 50.0 10 < th dose independent sin 8 NA
240 65.65 temperature 30.0 14400 > th dose independent rect. 17 2
255 65.65 temperature 30.0 14400 > th dose dependent sin 10 NA
274 65.66 temperature 30.0 14400 < th dose independent rect. 17 16
276 65.66 temperature 30.0 14400 > th dose dependent rect. 15 20
303 65.67 temperature 30.0 14400 > th dose dependent rect. 10 1
309 65.68 temperature 30.0 14400 < th dose independent rect. 8 3
311 65.68 temperature 30.0 14400 < th dose independent rect. 3 8
314 65.68 temperature 30.0 14400 < th dose independent rect. 17 11
319 65.68 temperature 30.0 14400 < th dose independent rect. 21 14
330 65.69 temperature 30.0 14400 > th dose independent sin 10 NA
332 65.69 temperature 30.0 14400 < th dose independent rect. 17 2
346 65.69 temperature 30.0 14400 > th dose dependent rect. 10 3
364 65.70 temperature 30.0 14400 < th dose independent sin 10 NA
368 65.70 atmosphere 1015.0 10 < th dose independent rect. 3 23
378 65.70 temperature 30.0 14400 > th dose dependent rect. 15 4
433 65.71 temperature 25.0 14400 > th dose independent rect. 4 3
434 65.71 temperature 30.0 14400 > th dose dependent sin 3 NA
437 65.71 temperature 30.0 14400 > th dose dependent no NA NA
438 65.71 temperature 30.0 14400 > th dose dependent rect. 12 1
439 65.71 temperature 30.0 14400 > th dose dependent rect. 15 1
444 65.71 temperature 30.0 14400 > th dose dependent rect. 9 10
553 65.72 temperature 25.0 14400 < th dose independent rect. 4 3
557 65.72 temperature 30.0 14400 > th dose dependent sin 19 NA
566 65.72 temperature 30.0 14400 > th dose dependent rect. 10 8
598 65.72 temperature 30.0 14400 > th dose dependent rect. 12 23
711 65.75 temperature 25.0 14400 > th dose dependent rect. 4 3
775 65.77 humidity 90.0 720 > th dose independent rect. 3 1
792 65.77 temperature 25.0 14400 > th dose dependent rect. 5 1
975 65.85 humidity 90.0 720 < th dose independent rect. 23 6