FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0124500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.18 (0.0604) R2 : 0.723
β1 : -0.778 (0.225) R2dD : 0.0083 R2D : 0.0014
β2 : 2.63 (0.226) R2dC : 0.208 R2C : 0.501
β3 : 2.12 (0.194) R2dE : 0.189 R2E : 0.489
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.582 (0.132) R2dN8 : 0.0165 R2N8 : 0.0285
σ : 1.13
deviance : 585.84
__
_____
C
peak time of C : 23.3
E
wheather : temperature
threshold : 19.9
memory length : 282
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.3
open length of G : 14.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
577.29 1.13 6.16 -0.635 2.67 2.09 0.697 0.843 0.607 23.3 20 286 15.1 14.7
578.88 1.12 6.18 -0.655 2.71 2.09 1.22 -- 0.581 23.3 19.95 284 15.2 14.6
578.06 1.12 6.15 -0.581 2.68 2.08 -- 1.28 0.641 23.3 19.99 289 15.2 14.6
585.84 1.13 6.18 -0.778 2.63 2.12 -- -- 0.582 23.3 19.9 282 15.3 14.4
652.57 1.19 6.08 -0.367 -- 3.92 -- 2.48 0.968 -- 17.2 254 15 13.5
696.2 1.24 6.14 -0.271 4.59 -- 2.19 -- 0.873 23.9 -- -- -- --
717.04 1.25 6.15 -0.359 4.58 -- -- -- 0.863 23.9 -- -- -- --
666.7 1.2 5.99 -0.119 -- 3.98 -- -- 1.03 -- 14.4 249 15.1 13.5
602.65 1.14 6.17 -- 2.66 2.06 -- -- 0.63 23.3 19.91 275 15.4 14.4
2039.06 2.11 6.05 -0.221 -- -- -- -- 0.923 -- -- -- -- --
720.45 1.26 6.14 -- 4.58 -- -- -- 0.903 23.9 -- -- -- --
663.69 1.2 6.03 -- -- 4 -- -- 0.963 -- 14.3 272 15 13.1
2040.35 2.11 6.04 -- -- -- -- -- 0.948 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 579.73 temperature 20.0 270 > th dose independent rect. 15 15
7 591.20 temperature 20.0 270 > th dose independent rect. 23 10
13 596.20 temperature 20.0 270 > th dose independent rect. 23 21
22 600.90 precipitation 0.1 270 > th dose independent rect. 2 2
26 602.70 precipitation 0.1 270 > th dose dependent rect. 2 2
33 604.91 humidity 90.0 30 < th dose independent rect. 20 22
35 605.23 temperature 20.0 90 < th dose independent rect. 22 12
40 605.98 temperature 20.0 90 > th dose independent sin 9 NA
43 606.30 precipitation 0.1 270 > th dose independent sin 10 NA
46 606.49 precipitation 0.1 270 < th dose independent rect. 17 23
47 606.49 precipitation 0.1 270 < th dose dependent rect. 17 23
58 607.32 temperature 20.0 90 < th dose independent rect. 23 6
77 609.98 temperature 20.0 270 < th dose independent rect. 21 8
90 611.02 temperature 20.0 90 < th dose independent sin 9 NA
93 611.23 precipitation 0.1 270 > th dose dependent sin 9 NA
100 611.68 precipitation 0.1 270 > th dose independent rect. 24 4
116 612.78 humidity 90.0 30 < th dose independent rect. 21 19
128 613.41 precipitation 0.1 270 > th dose independent rect. 21 7
142 614.02 humidity 80.0 30 > th dose dependent rect. 1 21
147 614.24 precipitation 0.1 270 > th dose dependent rect. 24 4
154 614.54 humidity 90.0 30 > th dose independent rect. 24 22
179 615.66 precipitation 0.1 270 > th dose independent rect. 23 20
182 615.79 humidity 80.0 30 > th dose dependent rect. 1 19
191 615.96 radiation 1.0 90 < th dose dependent sin 0 NA
196 616.06 humidity 90.0 30 < th dose independent rect. 23 17
208 616.35 precipitation 0.1 270 > th dose independent rect. 2 17
221 616.64 precipitation 0.1 270 < th dose independent rect. 19 21
222 616.64 precipitation 0.1 270 < th dose dependent rect. 19 21
262 618.03 precipitation 0.1 270 > th dose independent rect. 19 10
265 618.11 precipitation 0.1 270 > th dose independent rect. 19 14
275 618.32 radiation 1.0 90 < th dose independent sin 0 NA
280 618.54 radiation 1.0 90 < th dose independent rect. 3 17
295 619.05 humidity 50.0 90 > th dose dependent rect. 1 20
299 619.27 temperature 20.0 30 > th dose independent rect. 16 20
322 619.84 precipitation 0.1 270 > th dose independent rect. 17 16
323 619.85 temperature 20.0 270 < th dose independent rect. 23 2
336 620.08 precipitation 0.1 270 > th dose independent rect. 10 23
338 620.12 precipitation 0.1 270 > th dose independent rect. 13 20
353 620.26 humidity 90.0 30 > th dose independent rect. 3 19
359 620.35 radiation 10.0 90 < th dose dependent rect. 1 20
394 621.08 radiation 10.0 90 < th dose dependent rect. 3 17
420 621.56 radiation 1.0 30 < th dose independent rect. 5 15
444 621.89 precipitation 0.1 270 < th dose independent sin 3 NA
445 621.89 precipitation 0.1 270 < th dose dependent sin 3 NA
487 622.42 humidity 80.0 10 > th dose dependent rect. 3 19
524 622.87 precipitation 0.1 270 > th dose independent sin 3 NA
540 623.03 precipitation 0.1 270 > th dose independent rect. 2 7
572 623.43 precipitation 0.1 720 < th dose independent rect. 12 19
573 623.43 precipitation 0.1 720 < th dose dependent rect. 12 19
584 623.60 precipitation 0.1 270 < th dose independent rect. 11 13
585 623.60 precipitation 0.1 270 < th dose dependent rect. 11 13
604 623.75 precipitation 0.1 270 > th dose independent rect. 2 23
631 624.05 precipitation 0.1 270 > th dose independent rect. 17 21
651 624.31 humidity 50.0 270 > th dose independent rect. 15 4
661 624.37 radiation 10.0 90 < th dose dependent rect. 24 23
669 624.45 precipitation 0.1 270 > th dose independent rect. 23 10
683 624.54 precipitation 0.1 270 > th dose dependent rect. 2 15
707 624.67 precipitation 0.1 270 > th dose dependent rect. 2 7
720 624.73 precipitation 0.1 270 > th dose dependent rect. 23 18
729 624.81 radiation 1.0 90 > th dose independent sin 0 NA
755 624.99 radiation 10.0 90 < th dose dependent rect. 17 19
759 625.03 precipitation 0.1 270 > th dose independent no NA NA
760 625.03 precipitation 0.1 270 < th dose independent no NA NA
764 625.03 precipitation 0.1 270 < th dose dependent no NA NA
768 625.05 precipitation 0.1 270 > th dose independent rect. 8 23
833 625.76 humidity 50.0 270 > th dose dependent rect. 24 11
837 625.79 precipitation 0.1 270 > th dose dependent sin 3 NA
919 626.60 radiation 10.0 10 < th dose dependent rect. 16 19
924 626.63 precipitation 0.1 270 > th dose dependent rect. 21 12
933 626.71 radiation 1.0 30 < th dose dependent rect. 5 15
945 626.82 precipitation 0.1 270 > th dose dependent rect. 24 9
959 626.93 precipitation 0.1 270 > th dose independent rect. 19 19