Os08g0124100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Concanavalin A-like lectin/glucanase, subgroup domain containing protein.
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Os08g0124100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Concanavalin A-like lectin/glucanase, subgroup domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.01 | 0.627 | 3.99 | -0.253 | 0.944 | -1.64 | 1.46 | 1.28 | -1.27 | 22.8 | 24.57 | 1355 | -- | -- |
| 176.75 | 0.619 | 3.97 | 0.041 | 0.849 | -1.48 | 1.41 | -- | -1.24 | 23.2 | 23.7 | 2185 | -- | -- |
| 186.47 | 0.636 | 3.98 | -0.275 | 0.952 | -1.6 | -- | 1.06 | -1.26 | 23 | 24.5 | 1373 | -- | -- |
| 183.27 | 0.631 | 3.95 | 0.019 | 0.836 | -1.46 | -- | -- | -1.2 | 23.2 | 23.6 | 2331 | -- | -- |
| 209.79 | 0.675 | 4 | -0.22 | -- | -1.79 | -- | 0.746 | -1.33 | -- | 24.6 | 867 | -- | -- |
| 260.67 | 0.757 | 3.81 | 0.694 | 1.05 | -- | 1.36 | -- | -0.575 | 23.4 | -- | -- | -- | -- |
| 268.5 | 0.767 | 3.81 | 0.637 | 1.04 | -- | -- | -- | -0.582 | 23.6 | -- | -- | -- | -- |
| 208.25 | 0.672 | 3.96 | 0.0285 | -- | -1.76 | -- | -- | -1.28 | -- | 24.7 | 865 | -- | -- |
| 183.18 | 0.63 | 3.95 | -- | 0.82 | -1.47 | -- | -- | -1.21 | 23.4 | 23.67 | 2305 | -- | -- |
| 336.82 | 0.858 | 3.79 | 0.666 | -- | -- | -- | -- | -0.57 | -- | -- | -- | -- | -- |
| 279.2 | 0.782 | 3.83 | -- | 1.05 | -- | -- | -- | -0.653 | 23.6 | -- | -- | -- | -- |
| 208.11 | 0.672 | 3.94 | -- | -- | -1.75 | -- | -- | -1.24 | -- | 24.63 | 860 | -- | -- |
| 348.51 | 0.871 | 3.81 | -- | -- | -- | -- | -- | -0.644 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.99 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 4 | 173.33 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 11 | 175.09 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 20 | 175.84 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 9 |
| 56 | 176.82 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 60 | 176.88 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 79 | 177.81 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 89 | 177.84 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 100 | 178.11 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 101 | 178.17 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 24 | 13 |
| 139 | 178.94 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 140 | 178.95 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 141 | 178.95 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 145 | 178.97 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 153 | 179.27 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 179 | 179.53 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 185 | 179.59 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 10 | NA |
| 186 | 179.60 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 202 | 179.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 222 | 180.06 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 232 | 180.18 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 242 | 180.37 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 244 | 180.37 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 248 | 180.40 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 270 | 180.68 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 275 | 180.73 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 291 | 180.93 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 395 | 181.76 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 432 | 182.01 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 449 | 182.10 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 469 | 182.22 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 497 | 182.29 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 16 |
| 532 | 182.39 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 551 | 182.50 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 19 |
| 603 | 182.67 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 650 | 182.86 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 6 |
| 653 | 182.86 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 671 | 182.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 11 |
| 673 | 182.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 763 | 183.08 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 9 |
| 766 | 183.08 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 12 |
| 798 | 183.14 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 803 | 183.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 805 | 183.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 808 | 183.18 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 809 | 183.18 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 828 | 183.22 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 857 | 183.30 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 22 |
| 865 | 183.35 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 899 | 183.48 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 924 | 183.56 | temperature | 25.0 | 1440 | < th | dose independent | no | NA | NA |
| 925 | 183.56 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 950 | 183.64 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 982 | 183.73 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 21 |