Os08g0124000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance protein candidate (Fragment).
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Os08g0124000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Resistance protein candidate (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 238.68 | 0.726 | 5.72 | -0.779 | 2.39 | 3.01 | 2.64 | -0.845 | 0.408 | 23.4 | 21.4 | 4062 | -- | -- |
| 239.71 | 0.721 | 5.68 | -0.569 | 2.38 | 3.1 | 2.63 | -- | 0.459 | 23.4 | 21.48 | 4023 | -- | -- |
| 268.12 | 0.763 | 5.71 | -0.776 | 2.39 | 3.02 | -- | -0.54 | 0.415 | 23.4 | 21.5 | 4023 | -- | -- |
| 268.86 | 0.764 | 5.69 | -0.651 | 2.36 | 3.05 | -- | -- | 0.444 | 23.4 | 21.52 | 4016 | -- | -- |
| 569.53 | 1.11 | 5.68 | -0.282 | -- | 3.18 | -- | -0.457 | 0.282 | -- | 22.69 | 2390 | -- | -- |
| 476.06 | 1.02 | 5.45 | 1.27 | 2.52 | -- | 2.62 | -- | 1.5 | 23.5 | -- | -- | -- | -- |
| 505.69 | 1.05 | 5.45 | 1.16 | 2.5 | -- | -- | -- | 1.49 | 23.6 | -- | -- | -- | -- |
| 544.34 | 1.09 | 5.7 | -0.081 | -- | 3.54 | -- | -- | 0.332 | -- | 24.4 | 2349 | -- | -- |
| 263.56 | 0.756 | 5.66 | -- | 2.27 | 2.69 | -- | -- | 0.569 | 23.5 | 22.01 | 2478 | -- | -- |
| 899.38 | 1.4 | 5.4 | 1.23 | -- | -- | -- | -- | 1.52 | -- | -- | -- | -- | -- |
| 541.41 | 1.09 | 5.48 | -- | 2.52 | -- | -- | -- | 1.36 | 23.6 | -- | -- | -- | -- |
| 541.73 | 1.08 | 5.64 | -- | -- | 3.47 | -- | -- | 0.442 | -- | 24.64 | 2357 | -- | -- |
| 939.49 | 1.43 | 5.43 | -- | -- | -- | -- | -- | 1.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.46 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 2 | 228.36 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 3 | 230.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 9 | 230.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 13 | 230.62 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 16 | 231.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 17 | 231.62 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 33 | 232.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 79 | 233.31 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 117 | 233.94 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 160 | 234.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 223 | 235.56 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 225 | 235.58 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 234 | 235.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 265 | 236.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 341 | 236.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 6 |
| 398 | 237.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 416 | 237.48 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 575 | 238.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 592 | 239.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 872 | 241.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |