Os08g0122900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0122900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 293.44 | 0.805 | 5.76 | 1.4 | 1.32 | 4.42 | 3.29 | 6.37 | -2.52 | 13.4 | 20.2 | 209 | -- | -- |
| 302.42 | 0.816 | 5.69 | 1.39 | 1.32 | 1.81 | 3.04 | -- | -2.5 | 13.1 | 21.13 | 187 | -- | -- |
| 335.11 | 0.853 | 5.74 | 1.58 | 1.29 | 4.75 | -- | 6.3 | -2.49 | 13.7 | 19.91 | 223 | -- | -- |
| 338.26 | 0.857 | 5.69 | 1.57 | 1.28 | 2.09 | -- | -- | -2.49 | 13.6 | 20.74 | 187 | -- | -- |
| 430.07 | 0.966 | 5.77 | 1.46 | -- | 4.63 | -- | 6.87 | -2.54 | -- | 19.67 | 365 | -- | -- |
| 329.82 | 0.851 | 5.73 | 1.08 | 1.15 | -- | 3.14 | -- | -2.66 | 13.1 | -- | -- | -- | -- |
| 370.03 | 0.901 | 5.72 | 1.19 | 1.16 | -- | -- | -- | -2.64 | 13.5 | -- | -- | -- | -- |
| 433.74 | 0.97 | 5.71 | 1.44 | -- | 1.64 | -- | -- | -2.55 | -- | 20.6 | 401 | -- | -- |
| 395.29 | 0.931 | 5.73 | -- | 1.25 | 1.14 | -- | -- | -2.69 | 13.4 | 21.22 | 141 | -- | -- |
| 452.18 | 0.994 | 5.74 | 1.15 | -- | -- | -- | -- | -2.66 | -- | -- | -- | -- | -- |
| 407.53 | 0.944 | 5.75 | -- | 1.14 | -- | -- | -- | -2.77 | 13.5 | -- | -- | -- | -- |
| 482.48 | 1.03 | 5.76 | -- | -- | 1.14 | -- | -- | -2.77 | -- | 17.2 | 173 | -- | -- |
| 486.87 | 1.03 | 5.77 | -- | -- | -- | -- | -- | -2.79 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 279.63 | humidity | 8e+01 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 3 | 279.87 | humidity | 8e+01 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 6 | 280.10 | humidity | 8e+01 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 15 | 281.05 | humidity | 8e+01 | 43200 | > th | dose independent | rect. | 21 | 22 |
| 37 | 282.47 | humidity | 8e+01 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 47 | 282.90 | humidity | 7e+01 | 43200 | > th | dose dependent | rect. | 15 | 15 |
| 54 | 283.12 | humidity | 7e+01 | 43200 | > th | dose dependent | sin | 14 | NA |
| 85 | 283.97 | humidity | 8e+01 | 43200 | > th | dose independent | sin | 16 | NA |
| 113 | 284.76 | humidity | 8e+01 | 43200 | > th | dose independent | no | NA | NA |
| 121 | 284.94 | humidity | 8e+01 | 43200 | < th | dose independent | sin | 16 | NA |
| 122 | 284.94 | humidity | 7e+01 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 141 | 285.29 | humidity | 8e+01 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 171 | 285.93 | humidity | 8e+01 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 173 | 285.94 | humidity | 7e+01 | 43200 | > th | dose dependent | rect. | 19 | 18 |
| 207 | 286.47 | humidity | 8e+01 | 43200 | < th | dose independent | no | NA | NA |
| 229 | 286.73 | temperature | 2e+01 | 30 | > th | dose independent | rect. | 3 | 23 |
| 232 | 286.75 | humidity | 8e+01 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 254 | 287.06 | humidity | 8e+01 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 319 | 288.04 | humidity | 8e+01 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 328 | 288.23 | humidity | 8e+01 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 431 | 289.49 | humidity | 8e+01 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 470 | 289.85 | humidity | 8e+01 | 43200 | > th | dose independent | sin | 4 | NA |
| 490 | 290.00 | atmosphere | 1e+03 | 30 | > th | dose independent | rect. | 3 | 23 |
| 491 | 290.01 | temperature | 2e+01 | 90 | > th | dose independent | rect. | 3 | 10 |
| 558 | 290.60 | humidity | 7e+01 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 560 | 290.61 | humidity | 9e+01 | 270 | < th | dose independent | rect. | 12 | 19 |
| 585 | 290.81 | humidity | 9e+01 | 270 | < th | dose independent | rect. | 24 | 7 |
| 595 | 290.89 | temperature | 2e+01 | 90 | > th | dose independent | rect. | 3 | 12 |
| 629 | 291.16 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 661 | 291.38 | temperature | 2e+01 | 30 | < th | dose dependent | sin | 4 | NA |
| 668 | 291.41 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 699 | 291.61 | temperature | 2e+01 | 30 | < th | dose dependent | rect. | 2 | 19 |
| 724 | 291.77 | humidity | 7e+01 | 43200 | > th | dose dependent | no | NA | NA |
| 767 | 291.99 | wind | 9e+00 | 10 | < th | dose independent | rect. | 3 | 23 |
| 805 | 292.16 | humidity | 7e+01 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 810 | 292.19 | precipitation | 1e-01 | 30 | < th | dose independent | rect. | 3 | 23 |
| 812 | 292.19 | precipitation | 1e-01 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 848 | 292.42 | temperature | 2e+01 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 862 | 292.50 | humidity | 8e+01 | 43200 | < th | dose independent | sin | 4 | NA |
| 890 | 292.69 | temperature | 2e+01 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 904 | 292.80 | wind | 3e+00 | 43200 | < th | dose dependent | rect. | 16 | 5 |
| 956 | 293.10 | wind | 1e+00 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 963 | 293.14 | humidity | 9e+01 | 270 | < th | dose independent | rect. | 23 | 21 |
| 992 | 293.33 | humidity | 9e+01 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 997 | 293.35 | wind | 3e+00 | 43200 | < th | dose dependent | rect. | 14 | 7 |