Os08g0121900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF23 family protein.
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Os08g0121900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF23 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.1 | 0.506 | 7.87 | 0.0221 | 1.8 | -1.44 | 0.697 | -1.18 | 0.456 | 20.7 | 21.2 | 6 | -- | -- |
| 117.25 | 0.508 | 7.88 | -0.0427 | 1.8 | -1.13 | 0.598 | -- | 0.444 | 20.7 | 21.43 | 3 | -- | -- |
| 117.58 | 0.509 | 7.87 | -0.0172 | 1.8 | -1.43 | -- | -0.993 | 0.452 | 20.7 | 21.15 | 5 | -- | -- |
| 118.4 | 0.51 | 7.88 | -0.0672 | 1.8 | -1.16 | -- | -- | 0.442 | 20.7 | 21.4 | 4 | -- | -- |
| 296.28 | 0.806 | 7.8 | 0.0144 | -- | -1.75 | -- | -2.23 | 0.492 | -- | 19.21 | 6 | -- | -- |
| 128.8 | 0.532 | 7.85 | 0.156 | 1.75 | -- | 0.752 | -- | 0.547 | 20.4 | -- | -- | -- | -- |
| 130.59 | 0.535 | 7.85 | 0.132 | 1.75 | -- | -- | -- | 0.547 | 20.5 | -- | -- | -- | -- |
| 297.16 | 0.803 | 7.82 | 0.00289 | -- | -0.811 | -- | -- | 0.481 | -- | 20.03 | 3 | -- | -- |
| 118.51 | 0.51 | 7.88 | -- | 1.8 | -1.13 | -- | -- | 0.452 | 20.7 | 21.4 | 4 | -- | -- |
| 301.35 | 0.811 | 7.81 | 0.124 | -- | -- | -- | -- | 0.53 | -- | -- | -- | -- | -- |
| 131.05 | 0.535 | 7.86 | -- | 1.75 | -- | -- | -- | 0.532 | 20.5 | -- | -- | -- | -- |
| 297.16 | 0.803 | 7.82 | -- | -- | -0.753 | -- | -- | 0.476 | -- | 20.49 | 5 | -- | -- |
| 301.76 | 0.811 | 7.81 | -- | -- | -- | -- | -- | 0.516 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.57 | temperature | 20 | 30 | > th | dose independent | rect. | 16 | 20 |
| 3 | 109.46 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 18 |
| 10 | 110.56 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 11 |
| 21 | 111.46 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 3 |
| 26 | 111.73 | radiation | 10 | 10 | > th | dose independent | rect. | 12 | 4 |
| 35 | 112.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 37 | 112.29 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 11 |
| 38 | 112.31 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 12 |
| 41 | 112.42 | radiation | 1 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 48 | 112.62 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 50 | 112.74 | radiation | 1 | 30 | > th | dose dependent | rect. | 12 | 4 |
| 53 | 112.80 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 12 |
| 57 | 112.90 | radiation | 10 | 10 | > th | dose independent | rect. | 12 | 19 |
| 73 | 112.93 | humidity | 80 | 10 | < th | dose independent | rect. | 12 | 4 |
| 80 | 113.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 11 |
| 99 | 113.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 110 | 113.68 | radiation | 10 | 10 | > th | dose independent | sin | 18 | NA |
| 116 | 113.75 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 119 | 113.77 | radiation | 1 | 10 | > th | dose dependent | rect. | 12 | 7 |
| 135 | 113.83 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 4 |
| 186 | 114.25 | temperature | 20 | 270 | < th | dose dependent | rect. | 8 | 20 |
| 210 | 114.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 244 | 114.58 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 18 |
| 292 | 114.92 | radiation | 10 | 270 | > th | dose independent | rect. | 11 | 2 |
| 295 | 114.96 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 307 | 115.07 | radiation | 40 | 10 | < th | dose dependent | sin | 16 | NA |
| 311 | 115.12 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 6 |
| 364 | 115.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 3 |
| 372 | 115.35 | radiation | 30 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 377 | 115.38 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 13 |
| 378 | 115.39 | temperature | 20 | 30 | > th | dose independent | sin | 9 | NA |
| 391 | 115.46 | radiation | 20 | 30 | < th | dose independent | sin | 16 | NA |
| 417 | 115.55 | temperature | 15 | 90 | > th | dose dependent | sin | 11 | NA |
| 428 | 115.62 | radiation | 1 | 4320 | < th | dose independent | rect. | 21 | 8 |
| 429 | 115.62 | temperature | 20 | 270 | < th | dose dependent | rect. | 16 | 12 |
| 453 | 115.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 4 |
| 509 | 115.90 | humidity | 90 | 10 | < th | dose dependent | rect. | 12 | 4 |
| 518 | 115.95 | temperature | 20 | 270 | < th | dose independent | rect. | 7 | 20 |
| 532 | 116.02 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 537 | 116.04 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 18 |
| 547 | 116.08 | radiation | 1 | 10 | > th | dose dependent | sin | 16 | NA |
| 560 | 116.14 | radiation | 10 | 10 | < th | dose independent | sin | 19 | NA |
| 571 | 116.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 11 |
| 604 | 116.25 | temperature | 20 | 270 | < th | dose dependent | sin | 16 | NA |
| 620 | 116.32 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 4 |
| 639 | 116.35 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 643 | 116.36 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 14 |
| 668 | 116.44 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 11 |
| 688 | 116.52 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 23 | 2 |
| 700 | 116.55 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 5 |
| 735 | 116.63 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 7 |
| 746 | 116.66 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 762 | 116.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 794 | 116.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 803 | 116.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 847 | 116.93 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 22 |
| 871 | 116.99 | temperature | 20 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 872 | 116.99 | temperature | 20 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 917 | 117.07 | radiation | 10 | 10 | > th | dose independent | rect. | 10 | 21 |
| 929 | 117.09 | temperature | 20 | 10 | < th | dose dependent | rect. | 11 | 19 |
| 930 | 117.09 | temperature | 20 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 933 | 117.10 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 7 |
| 955 | 117.11 | temperature | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 996 | 117.15 | temperature | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |