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Os08g0119800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Photosystem II core complex proteins psbY, chloroplast precursor (L- arginine metabolising enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1); Photosystem II protein psbY-2 (psbY-A2)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.73 | 0.219 | 16.3 | -0.834 | 0.439 | 0.00489 | 0.444 | -1.69 | -0.502 | 21.3 | 20.2 | 3367 | -- | -- |
| 24.07 | 0.228 | 16.2 | -0.444 | 0.427 | 0.0713 | 0.337 | -- | -0.41 | 21.3 | 16.01 | 23660 | -- | -- |
| 22.35 | 0.22 | 16.3 | -0.843 | 0.437 | 0.00796 | -- | -1.62 | -0.501 | 21.2 | 20.1 | 3185 | -- | -- |
| 24.5 | 0.231 | 16.2 | -0.496 | 0.441 | 0.105 | -- | -- | -0.429 | 21.1 | 12.17 | 28438 | -- | -- |
| 33.28 | 0.269 | 16.3 | -0.96 | -- | 0.0846 | -- | -1.93 | -0.543 | -- | 21.2 | 3143 | -- | -- |
| 24.16 | 0.23 | 16.2 | -0.379 | 0.44 | -- | 0.391 | -- | -0.381 | 21.3 | -- | -- | -- | -- |
| 24.69 | 0.233 | 16.2 | -0.392 | 0.44 | -- | -- | -- | -0.381 | 21.1 | -- | -- | -- | -- |
| 35.55 | 0.278 | 16.2 | -0.544 | -- | 0.151 | -- | -- | -0.444 | -- | 12.27 | 28162 | -- | -- |
| 26.27 | 0.239 | 16.2 | -- | 0.441 | -0.245 | -- | -- | -0.265 | 21.2 | 12.4 | 47520 | -- | -- |
| 35.9 | 0.28 | 16.2 | -0.391 | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
| 28.75 | 0.251 | 16.2 | -- | 0.441 | -- | -- | -- | -0.338 | 21.1 | -- | -- | -- | -- |
| 37.48 | 0.285 | 16.2 | -- | -- | -0.234 | -- | -- | -0.257 | -- | 19.1 | 47520 | -- | -- |
| 39.93 | 0.295 | 16.2 | -- | -- | -- | -- | -- | -0.34 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 3 | 21.63 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 10 | 21.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 14 | 21.69 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 16 | 21.69 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 17 |
| 17 | 21.70 | wind | 5 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 18 | 21.70 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 24 | 21.70 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 8 |
| 25 | 21.71 | wind | 5 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 27 | 21.71 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 37 | 21.72 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 45 | 21.72 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 19 |
| 70 | 21.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 81 | 21.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 16 |
| 91 | 21.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 14 |
| 103 | 21.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 110 | 21.79 | temperature | 20 | 4320 | > th | dose dependent | sin | 17 | NA |
| 116 | 21.79 | wind | 3 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 119 | 21.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 11 |
| 120 | 21.80 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 2 | 11 |
| 158 | 21.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 14 |
| 184 | 21.84 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 189 | 21.84 | wind | 5 | 4320 | > th | dose independent | rect. | 19 | 16 |
| 196 | 21.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 202 | 21.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 11 |
| 238 | 21.86 | wind | 5 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 241 | 21.86 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 259 | 21.87 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 269 | 21.87 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 332 | 21.89 | wind | 5 | 4320 | > th | dose independent | rect. | 19 | 19 |
| 342 | 21.90 | temperature | 25 | 4320 | < th | dose independent | sin | 18 | NA |
| 343 | 21.90 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 5 | NA |
| 366 | 21.90 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 368 | 21.90 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 384 | 21.91 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 7 | NA |
| 410 | 21.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 427 | 21.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 433 | 21.92 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 473 | 21.93 | wind | 3 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 480 | 21.93 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 520 | 21.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 608 | 21.95 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 613 | 21.95 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 5 |
| 622 | 21.96 | temperature | 25 | 4320 | > th | dose independent | sin | 18 | NA |
| 649 | 21.96 | wind | 5 | 4320 | < th | dose independent | rect. | 19 | 19 |
| 655 | 21.96 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 21 |
| 662 | 21.96 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 705 | 21.97 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 800 | 21.99 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 830 | 21.99 | wind | 1 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 857 | 22.00 | wind | 3 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 954 | 22.01 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 21 |
| 957 | 22.01 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 21 |
| 964 | 22.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 979 | 22.01 | wind | 1 | 1440 | < th | dose dependent | rect. | 23 | 8 |
