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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0118100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to F5O11.14 (ACR8).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.89 (0.0431) R2 : 0.426
β1 : -0.549 (0.161) R2dD : 0.0162 R2D : -0.0125
β2 : 2.25 (0.138) R2dC : 0.525 R2C : 0.238
β3 : -0.933 (0.121) R2dE : 0.128 R2E : -0.212
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.15 (0.397) R2dD*E : 0.086 R2D*E : 0.0696
γ1 : -0.447 (0.0997) R2dN8 : 0.0412 R2N8 : -0.0344
σ : 0.794
deviance : 290.9
__
_____
C
peak time of C : 5.34
E
wheather : temperature
threshold : 25.16
memory length : 12
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.49
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
289.25 0.799 5.9 -0.633 2.29 -0.942 -1.37 4 -0.49 5.41 25.2 10 2.87 --
319.84 0.839 5.87 -0.215 2.31 -0.967 2.17 -- -0.304 5.07 25.4 6 3.75 --
290.9 0.794 5.89 -0.549 2.25 -0.933 -- 3.15 -0.447 5.34 25.16 12 3.49 --
330.01 0.846 5.85 -0.202 2.23 -0.847 -- -- -0.289 5.32 25.4 6 4.25 --
344.17 0.864 5.85 -0.134 -- 1.75 -- 0.895 -0.039 -- 37.37 48 0.0676 --
344.16 0.87 5.81 -0.159 1.75 -- 0.913 -- -0.0461 6.33 -- -- -- --
345.84 0.871 5.81 -0.146 1.76 -- -- -- -0.0479 6.5 -- -- -- --
345.84 0.866 5.85 -0.146 -- 1.75 -- -- -0.048 -- 49.69 60 0.00379 --
331.19 0.848 5.85 -- 2.24 -0.854 -- -- -0.281 5.33 25.3 6 4.13 --
506.37 1.05 5.84 -0.102 -- -- -- -- -0.0114 -- -- -- -- --
346.4 0.871 5.81 -- 1.75 -- -- -- -0.0317 6.5 -- -- -- --
346.4 0.867 5.85 -- -- 1.75 -- -- -0.0318 -- 55.69 61 0.00748 --
506.64 1.05 5.84 -- -- -- -- -- -8.52e-05 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.31 temperature 25.0 10 < th dose independent rect. 22 6
3 290.32 temperature 15.0 10 > th dose independent rect. 12 16
4 290.74 temperature 15.0 30 > th dose independent rect. 23 5
8 291.57 temperature 15.0 270 > th dose independent rect. 19 8
9 291.61 temperature 25.0 10 < th dose independent sin 9 NA
13 292.77 temperature 30.0 10 < th dose independent rect. 4 8
14 292.81 temperature 15.0 270 > th dose independent rect. 22 4
15 292.90 temperature 15.0 270 > th dose independent rect. 9 17
20 293.62 temperature 25.0 10 < th dose independent rect. 18 10
23 293.75 humidity 50.0 10 > th dose independent rect. 12 16
28 294.09 wind 9.0 10 < th dose independent rect. 12 16
39 295.00 radiation 10.0 30 < th dose dependent sin 9 NA
42 295.26 humidity 50.0 10 > th dose dependent rect. 12 16
44 295.57 wind 9.0 270 < th dose independent rect. 9 17
45 295.69 precipitation 0.1 10 < th dose independent rect. 12 16
46 295.69 precipitation 0.1 10 < th dose dependent rect. 12 16
47 295.72 precipitation 0.1 10 < th dose independent rect. 4 8
49 295.72 precipitation 0.1 10 < th dose dependent rect. 4 8
54 295.89 temperature 10.0 10 > th dose independent rect. 4 8
56 295.89 atmosphere 995.0 10 > th dose independent rect. 4 8
57 295.89 atmosphere 1015.0 10 < th dose independent rect. 4 8
59 295.89 humidity 60.0 10 > th dose dependent rect. 23 5
61 296.06 wind 9.0 10 < th dose independent rect. 4 8
62 296.13 radiation 1.0 90 > th dose independent sin 9 NA
64 296.19 atmosphere 1015.0 270 < th dose independent rect. 2 20
71 296.40 temperature 15.0 270 > th dose independent rect. 23 1
73 296.48 humidity 50.0 10 > th dose independent rect. 4 8
75 296.59 atmosphere 995.0 30 > th dose independent rect. 4 19
79 296.73 precipitation 0.1 270 < th dose independent rect. 2 7
80 296.73 precipitation 0.1 270 < th dose dependent rect. 2 7
83 296.82 atmosphere 995.0 270 > th dose independent rect. 2 20
84 296.82 radiation 1.0 270 < th dose dependent rect. 16 11
85 296.84 wind 7.0 270 < th dose independent rect. 2 7
89 296.89 wind 9.0 30 < th dose dependent rect. 23 5
94 296.98 radiation 1.0 10 < th dose independent sin 9 NA
113 297.31 precipitation 0.1 270 < th dose independent rect. 9 17
114 297.31 precipitation 0.1 270 < th dose dependent rect. 9 17
115 297.31 humidity 50.0 10 > th dose dependent rect. 10 18
120 297.34 temperature 10.0 270 > th dose independent rect. 2 7
122 297.34 humidity 50.0 270 > th dose independent rect. 2 7
123 297.34 atmosphere 995.0 270 > th dose independent rect. 2 7
124 297.34 atmosphere 1015.0 270 < th dose independent rect. 2 7
129 297.36 precipitation 0.1 270 < th dose independent rect. 2 20
130 297.36 precipitation 0.1 270 < th dose dependent rect. 2 20
133 297.39 temperature 30.0 270 < th dose independent rect. 2 7
143 297.55 atmosphere 995.0 90 > th dose independent rect. 4 15
145 297.58 temperature 30.0 270 < th dose independent rect. 22 4
146 297.58 humidity 50.0 270 > th dose independent rect. 22 4
149 297.58 atmosphere 995.0 270 > th dose independent rect. 22 4
150 297.58 radiation 1.0 270 < th dose independent rect. 22 4
155 297.58 precipitation 0.1 270 < th dose independent rect. 22 4
156 297.58 temperature 10.0 270 > th dose independent rect. 2 20
157 297.58 radiation 1.0 270 < th dose dependent rect. 22 4
162 297.58 precipitation 0.1 270 < th dose dependent rect. 22 4
165 297.61 radiation 10.0 30 < th dose dependent rect. 23 15
166 297.63 wind 9.0 270 < th dose independent rect. 22 4
169 297.69 wind 7.0 270 < th dose independent rect. 7 9
170 297.73 wind 9.0 10 < th dose dependent rect. 4 8
176 297.82 atmosphere 1010.0 30 < th dose independent rect. 23 5
188 298.06 atmosphere 995.0 10 > th dose independent rect. 12 16
202 298.28 temperature 10.0 30 > th dose dependent rect. 23 5
219 298.53 wind 9.0 10 < th dose dependent rect. 12 16
227 298.59 humidity 50.0 30 > th dose independent rect. 23 5
230 298.59 atmosphere 995.0 30 > th dose independent rect. 23 5
231 298.59 radiation 1.0 30 < th dose independent rect. 23 5
236 298.59 temperature 10.0 30 > th dose independent rect. 4 19
239 298.59 radiation 1.0 30 < th dose dependent rect. 23 5
245 298.64 temperature 25.0 10 < th dose independent rect. 12 16
247 298.66 wind 9.0 30 < th dose independent rect. 23 5
256 298.71 precipitation 0.1 270 < th dose independent rect. 3 16
257 298.71 precipitation 0.1 270 < th dose dependent rect. 3 16
290 298.80 humidity 60.0 270 > th dose independent rect. 19 8
298 298.81 humidity 50.0 270 > th dose independent rect. 9 17
300 298.82 humidity 50.0 270 > th dose dependent rect. 22 4
315 298.86 temperature 30.0 270 < th dose independent rect. 19 8
317 298.86 atmosphere 995.0 270 > th dose independent rect. 19 8
318 298.86 radiation 1.0 270 < th dose independent rect. 19 8
323 298.86 temperature 10.0 270 > th dose independent rect. 3 16
324 298.86 atmosphere 1015.0 270 < th dose independent rect. 3 16
331 298.86 radiation 1.0 270 < th dose dependent rect. 19 8
338 298.89 radiation 1.0 270 < th dose independent rect. 16 11
344 298.91 precipitation 0.1 10 < th dose independent rect. 4 19
345 298.91 precipitation 0.1 10 < th dose dependent rect. 4 19
351 298.95 atmosphere 1010.0 10 < th dose independent rect. 12 16
354 298.98 precipitation 0.1 30 < th dose independent rect. 23 5
356 298.98 precipitation 0.1 30 < th dose dependent rect. 23 5
358 298.99 wind 9.0 270 < th dose independent rect. 19 8
369 299.06 precipitation 0.1 270 < th dose independent rect. 19 8
371 299.06 precipitation 0.1 270 < th dose dependent rect. 19 8
379 299.14 atmosphere 995.0 270 > th dose dependent rect. 2 7
382 299.18 radiation 1.0 90 > th dose independent rect. 15 21
383 299.21 wind 1.0 270 > th dose independent rect. 9 17
387 299.26 humidity 50.0 30 > th dose dependent rect. 19 9
402 299.35 radiation 1.0 10 < th dose independent rect. 23 15
426 299.47 radiation 30.0 270 < th dose dependent rect. 3 6
435 299.56 radiation 1.0 270 < th dose dependent rect. 10 17
448 299.68 radiation 10.0 30 < th dose dependent rect. 23 13
464 299.78 temperature 10.0 270 > th dose dependent rect. 22 4
502 299.95 radiation 40.0 270 < th dose dependent rect. 2 8
565 300.35 radiation 20.0 270 < th dose independent rect. 2 7
603 300.48 humidity 50.0 270 > th dose dependent rect. 19 8
610 300.52 temperature 25.0 10 < th dose independent rect. 22 10
617 300.54 temperature 25.0 10 < th dose independent rect. 16 12
630 300.56 wind 1.0 270 > th dose independent rect. 2 7
631 300.56 radiation 1.0 10 < th dose independent rect. 23 13
648 300.65 atmosphere 995.0 270 > th dose independent rect. 9 17
677 300.97 wind 1.0 270 > th dose independent rect. 22 4
726 301.14 radiation 1.0 10 > th dose independent rect. 17 19
791 301.33 wind 7.0 270 < th dose independent rect. 16 15
792 301.33 wind 9.0 270 < th dose independent rect. 2 20
799 301.38 radiation 40.0 270 < th dose independent rect. 2 7
802 301.41 temperature 10.0 1440 > th dose independent rect. 5 8
805 301.41 atmosphere 995.0 1440 > th dose independent rect. 5 8
809 301.41 temperature 10.0 1440 > th dose independent rect. 13 16
831 301.49 atmosphere 1015.0 10 < th dose dependent rect. 23 5
838 301.53 radiation 1.0 270 < th dose independent rect. 10 17
841 301.55 wind 9.0 270 < th dose independent rect. 3 16
846 301.59 wind 9.0 30 < th dose independent rect. 4 19
866 301.76 wind 9.0 270 < th dose dependent rect. 2 7
894 301.80 atmosphere 1015.0 270 < th dose dependent rect. 22 5
939 302.04 wind 9.0 270 < th dose independent rect. 3 18
970 302.15 radiation 1.0 10 > th dose independent rect. 5 7