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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0117700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0184) R2 : 0.00374
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0508 (0.0388) R2dN8 : 0.00483 R2N8 : 0.00374
σ : 0.347
deviance : 55.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.4 0.313 3.31 0.351 0.0899 -0.294 0.298 -1.1 -0.0443 0.282 39.75 740 -- --
46.39 0.317 3.32 0.275 0.12 -0.346 0.361 -- -0.0678 23.8 40 659 -- --
44.67 0.311 3.31 0.342 0.09 -0.297 -- -1.08 -0.0422 1.3 40.18 807 -- --
46.6 0.318 3.32 0.222 0.119 -0.38 -- -- -0.0763 1.6 40.01 658 -- --
45.02 0.312 3.31 0.345 -- -0.296 -- -1.08 -0.0435 -- 40.93 817 -- --
48.85 0.328 3.31 0.316 0.19 -- 0.879 -- -0.0168 19.8 -- -- -- --
51.05 0.335 3.31 0.293 0.189 -- -- -- -0.0162 20.1 -- -- -- --
46.97 0.319 3.32 0.257 -- -0.339 -- -- -0.0888 -- 40.02 870 -- --
47.99 0.323 3.34 -- 0.157 -0.429 -- -- -0.115 2.03 40 653 -- --
53.02 0.34 3.3 0.291 -- -- -- -- -0.0184 -- -- -- -- --
53.31 0.342 3.32 -- 0.188 -- -- -- -0.0488 20.2 -- -- -- --
48.56 0.325 3.33 -- -- -0.375 -- -- -0.101 -- 40 875 -- --
55.26 0.347 3.31 -- -- -- -- -- -0.0508 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.64 radiation 40 720 < th dose independent rect. 3 18
2 43.70 radiation 40 720 < th dose independent rect. 9 6
3 43.72 radiation 40 720 < th dose independent rect. 17 22
7 43.81 radiation 40 720 < th dose independent sin 12 NA
9 43.84 radiation 40 720 < th dose independent rect. 18 17
10 43.85 radiation 40 720 < th dose independent rect. 1 21
24 44.00 radiation 40 720 < th dose independent rect. 23 23
26 44.02 radiation 40 720 < th dose independent rect. 1 14
28 44.02 radiation 20 720 > th dose dependent rect. 15 18
29 44.05 radiation 40 720 > th dose independent sin 12 NA
31 44.05 radiation 40 720 < th dose independent rect. 3 8
34 44.06 radiation 40 720 < th dose independent rect. 18 19
36 44.06 radiation 40 720 > th dose independent rect. 13 22
40 44.09 radiation 40 720 < th dose independent rect. 9 21
44 44.11 radiation 40 720 < th dose independent rect. 8 14
45 44.12 radiation 40 720 < th dose independent sin 1 NA
47 44.12 temperature 30 270 < th dose independent rect. 8 21
52 44.15 radiation 20 720 < th dose independent sin 12 NA
60 44.17 radiation 40 720 < th dose independent rect. 3 10
67 44.18 radiation 20 720 > th dose dependent sin 12 NA
101 44.29 radiation 20 720 > th dose independent rect. 15 18
109 44.31 temperature 30 720 < th dose independent rect. 19 16
115 44.33 radiation 40 720 > th dose independent rect. 8 3
133 44.33 radiation 40 720 < th dose independent rect. 13 23
135 44.34 temperature 30 720 > th dose independent rect. 9 2
139 44.34 radiation 10 720 > th dose dependent rect. 13 20
140 44.34 radiation 30 720 > th dose dependent rect. 13 22
172 44.40 temperature 30 270 < th dose independent rect. 9 9
187 44.44 radiation 40 720 < th dose independent no NA NA
189 44.44 temperature 30 270 > th dose independent rect. 14 22
193 44.45 radiation 20 720 > th dose dependent rect. 7 2
196 44.46 radiation 40 720 > th dose independent no NA NA
199 44.46 radiation 40 720 > th dose independent rect. 8 7
358 44.46 temperature 30 720 > th dose dependent rect. 9 2
359 44.46 humidity 90 10 < th dose dependent rect. 17 17
398 44.51 radiation 20 720 > th dose independent sin 12 NA
442 44.55 radiation 20 720 < th dose independent rect. 15 18
444 44.55 radiation 30 720 > th dose dependent sin 5 NA
464 44.56 temperature 25 720 > th dose dependent sin 4 NA
470 44.57 temperature 30 720 < th dose independent rect. 1 15
473 44.57 radiation 30 720 > th dose dependent no NA NA
474 44.57 radiation 30 720 > th dose dependent rect. 8 8
644 44.59 radiation 40 720 < th dose dependent sin 12 NA
667 44.60 radiation 40 720 > th dose dependent rect. 10 1
682 44.60 temperature 25 270 > th dose dependent rect. 14 21
728 44.63 temperature 30 270 > th dose dependent rect. 16 20
810 44.66 temperature 25 720 > th dose dependent rect. 1 16
891 44.66 radiation 30 720 > th dose dependent rect. 10 23
912 44.67 temperature 25 720 > th dose dependent rect. 6 11
918 44.67 temperature 25 720 > th dose dependent rect. 2 14
991 44.70 radiation 40 720 < th dose dependent rect. 3 17