Os08g0117000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Kinesin, motor region domain containing protein.
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Os08g0117000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Kinesin, motor region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.4 | 0.434 | 7.72 | -0.747 | 1.19 | 1.06 | 0.132 | -1.21 | 0.268 | 0.721 | 19.3 | 3033 | -- | -- |
| 87.23 | 0.435 | 7.75 | -0.862 | 1.21 | 1.38 | 0.165 | -- | 0.257 | 0.679 | 19.1 | 3020 | -- | -- |
| 85.29 | 0.43 | 7.72 | -0.767 | 1.21 | 1.06 | -- | -1.19 | 0.263 | 0.745 | 19.24 | 2857 | -- | -- |
| 87.11 | 0.435 | 7.76 | -0.909 | 1.21 | 1.32 | -- | -- | 0.235 | 0.744 | 19.2 | 2873 | -- | -- |
| 171.42 | 0.613 | 7.76 | -1.18 | -- | 0.884 | -- | -0.603 | 0.124 | -- | 19.24 | 2857 | -- | -- |
| 114.93 | 0.503 | 7.82 | -1.56 | 1.18 | -- | 0.093 | -- | -0.045 | 0.654 | -- | -- | -- | -- |
| 114.96 | 0.502 | 7.82 | -1.57 | 1.18 | -- | -- | -- | -0.0455 | 0.646 | -- | -- | -- | -- |
| 172.76 | 0.615 | 7.77 | -1.24 | -- | 0.965 | -- | -- | 0.109 | -- | 19.24 | 2857 | -- | -- |
| 94.14 | 0.452 | 7.72 | -- | 1.23 | 1.81 | -- | -- | 0.439 | 0.803 | 18.8 | 10979 | -- | -- |
| 202.35 | 0.665 | 7.8 | -1.52 | -- | -- | -- | -- | -0.0248 | -- | -- | -- | -- | -- |
| 179.61 | 0.627 | 7.78 | -- | 1.16 | -- | -- | -- | 0.129 | 0.581 | -- | -- | -- | -- |
| 180.68 | 0.626 | 7.7 | -- | -- | 1.64 | -- | -- | 0.41 | -- | 17.03 | 24554 | -- | -- |
| 263.63 | 0.758 | 7.76 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.22 | radiation | 20 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 3 | 86.54 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 4 | 86.61 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 14 |
| 7 | 86.84 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 8 | 86.90 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 11 | 86.97 | radiation | 10 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 18 | 87.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 20 | 87.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 23 | 87.18 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 26 | 87.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 28 | 87.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 14 |
| 29 | 87.27 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 31 | 87.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 8 | 16 |
| 33 | 87.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 19 |
| 34 | 87.29 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 36 | 87.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 44 | 87.32 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 15 |
| 47 | 87.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 19 |
| 72 | 87.42 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 79 | 87.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 8 | 17 |
| 101 | 87.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 110 | 87.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 113 | 87.54 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 144 | 87.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 152 | 87.62 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 171 | 87.66 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 183 | 87.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 186 | 87.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 189 | 87.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 213 | 87.74 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 244 | 87.79 | wind | 3 | 43200 | < th | dose dependent | sin | 1 | NA |
| 245 | 87.80 | wind | 3 | 43200 | < th | dose independent | sin | 1 | NA |
| 246 | 87.80 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 254 | 87.82 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 264 | 87.83 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 304 | 87.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 312 | 87.88 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 314 | 87.89 | wind | 3 | 43200 | > th | dose independent | sin | 2 | NA |
| 334 | 87.90 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 339 | 87.90 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 350 | 87.91 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 367 | 87.93 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 381 | 87.95 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 391 | 87.96 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 398 | 87.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 402 | 87.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 403 | 87.97 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 406 | 87.98 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 417 | 87.98 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 418 | 87.98 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 6 |
| 419 | 87.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 10 | 14 |
| 449 | 88.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 472 | 88.02 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 477 | 88.03 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 487 | 88.03 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 541 | 88.07 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 543 | 88.07 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 548 | 88.07 | temperature | 25 | 4320 | < th | dose dependent | sin | 20 | NA |
| 664 | 88.15 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 691 | 88.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 709 | 88.18 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 22 |
| 738 | 88.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 742 | 88.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 802 | 88.23 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 821 | 88.24 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 829 | 88.25 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 838 | 88.25 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 909 | 88.29 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 953 | 88.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 960 | 88.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 14 |
| 970 | 88.31 | wind | 1 | 43200 | > th | dose dependent | sin | 5 | NA |
| 972 | 88.31 | temperature | 25 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 982 | 88.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 984 | 88.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 12 |