Os08g0116900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9 elicitor response-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0116900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Avr9 elicitor response-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.05 | 0.5 | 6.58 | -1.81 | 0.171 | 1.13 | -0.206 | -2.79 | -0.647 | 10.2 | 26.71 | 1266 | -- | -- |
| 114.73 | 0.499 | 6.5 | -1.15 | 0.164 | 0.827 | -0.215 | -- | -0.514 | 9.37 | 26.7 | 1258 | -- | -- |
| 113.2 | 0.496 | 6.58 | -1.78 | 0.171 | 1.12 | -- | -2.67 | -0.633 | 10.5 | 26.84 | 1264 | -- | -- |
| 114.67 | 0.499 | 6.5 | -1.16 | 0.176 | 0.849 | -- | -- | -0.513 | 10.6 | 26.73 | 1241 | -- | -- |
| 114.76 | 0.499 | 6.58 | -1.77 | -- | 1.07 | -- | -2.55 | -0.626 | -- | 26.9 | 1308 | -- | -- |
| 144.05 | 0.563 | 6.5 | -0.89 | 0.108 | -- | -0.308 | -- | -0.5 | 7.6 | -- | -- | -- | -- |
| 144.29 | 0.563 | 6.5 | -0.899 | 0.111 | -- | -- | -- | -0.5 | 6.97 | -- | -- | -- | -- |
| 116.17 | 0.502 | 6.5 | -1.16 | -- | 0.799 | -- | -- | -0.508 | -- | 26.77 | 1310 | -- | -- |
| 147.35 | 0.565 | 6.44 | -- | 0.182 | 0.663 | -- | -- | -0.311 | 10.4 | 28.13 | 1220 | -- | -- |
| 144.94 | 0.563 | 6.5 | -0.896 | -- | -- | -- | -- | -0.498 | -- | -- | -- | -- | -- |
| 165.57 | 0.602 | 6.48 | -- | 0.102 | -- | -- | -- | -0.4 | 7.52 | -- | -- | -- | -- |
| 147.5 | 0.566 | 6.42 | -- | -- | 0.68 | -- | -- | -0.22 | -- | 32.02 | 1047 | -- | -- |
| 166.13 | 0.602 | 6.48 | -- | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 57 | 113.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 70 | 113.28 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 83 | 113.39 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 85 | 113.45 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 246 | 114.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 396 | 115.23 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 399 | 115.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 457 | 115.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 463 | 115.51 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 464 | 115.51 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 10 |
| 471 | 115.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 534 | 115.73 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 17 |
| 544 | 115.80 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 571 | 115.86 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 573 | 115.87 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 17 |
| 671 | 115.91 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 695 | 116.00 | temperature | 30 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 773 | 116.19 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 777 | 116.20 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 780 | 116.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 846 | 116.32 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 864 | 116.34 | humidity | 80 | 1440 | < th | dose dependent | sin | 14 | NA |
| 884 | 116.42 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 891 | 116.44 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 922 | 116.53 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 942 | 116.57 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 950 | 116.58 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 953 | 116.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 954 | 116.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 955 | 116.59 | temperature | 30 | 14400 | > th | dose dependent | sin | 12 | NA |
| 962 | 116.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 13 |
| 967 | 116.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 968 | 116.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 974 | 116.63 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 975 | 116.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 989 | 116.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |