Os08g0116800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exoribonuclease domain containing protein.
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Os08g0116800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exoribonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.46 | 0.549 | 8.17 | 0.605 | 3.81 | 2.49 | 0.158 | 3.19 | -0.226 | 19.1 | 21.14 | 155 | -- | -- |
| 138.83 | 0.549 | 8.11 | 0.854 | 3.82 | 1.67 | 0.0656 | -- | -0.128 | 19.1 | 22.41 | 328 | -- | -- |
| 135.96 | 0.543 | 8.18 | 0.637 | 3.84 | 2.5 | -- | 3.04 | -0.206 | 19.1 | 21.42 | 210 | -- | -- |
| 138.46 | 0.548 | 8.12 | 0.781 | 3.84 | 1.53 | -- | -- | -0.155 | 19.1 | 22.45 | 338 | -- | -- |
| 882.1 | 1.39 | 8.06 | 0.53 | -- | 1.9 | -- | 1.55 | -0.287 | -- | 21.42 | 210 | -- | -- |
| 162.51 | 0.598 | 8.16 | 0.428 | 3.75 | -- | -0.0413 | -- | -0.348 | 19.2 | -- | -- | -- | -- |
| 162.51 | 0.597 | 8.16 | 0.429 | 3.75 | -- | -- | -- | -0.348 | 19.2 | -- | -- | -- | -- |
| 880.34 | 1.39 | 8.04 | 0.64 | -- | 1.52 | -- | -- | -0.242 | -- | 22.45 | 338 | -- | -- |
| 152.27 | 0.575 | 8.15 | -- | 3.81 | 1.12 | -- | -- | -0.277 | 19.2 | 22.7 | 314 | -- | -- |
| 908.78 | 1.41 | 8.08 | 0.362 | -- | -- | -- | -- | -0.412 | -- | -- | -- | -- | -- |
| 167.37 | 0.605 | 8.18 | -- | 3.75 | -- | -- | -- | -0.396 | 19.2 | -- | -- | -- | -- |
| 889.82 | 1.39 | 8.06 | -- | -- | 1.27 | -- | -- | -0.328 | -- | 22.7 | 314 | -- | -- |
| 912.23 | 1.41 | 8.09 | -- | -- | -- | -- | -- | -0.453 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.76 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 18 |
| 2 | 130.30 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 16 |
| 6 | 131.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 17 | 132.22 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 12 |
| 18 | 132.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 21 | 132.56 | temperature | 10 | 10 | > th | dose dependent | sin | 8 | NA |
| 27 | 133.00 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 28 | 133.08 | temperature | 30 | 10 | < th | dose dependent | sin | 8 | NA |
| 49 | 134.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 57 | 134.26 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 23 |
| 99 | 135.19 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 114 | 135.87 | temperature | 20 | 30 | > th | dose independent | sin | 7 | NA |
| 116 | 135.88 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 4 |
| 121 | 135.98 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 12 |
| 140 | 136.28 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 18 |
| 148 | 136.37 | temperature | 20 | 30 | < th | dose independent | sin | 7 | NA |
| 149 | 136.38 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 16 |
| 152 | 136.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 153 | 136.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 163 | 136.48 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 20 |
| 168 | 136.51 | temperature | 25 | 30 | < th | dose dependent | rect. | 22 | 16 |
| 176 | 136.55 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 13 |
| 186 | 136.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 252 | 136.93 | temperature | 20 | 270 | > th | dose independent | sin | 10 | NA |
| 374 | 137.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 409 | 137.62 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 442 | 137.75 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 453 | 137.80 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 22 |
| 455 | 137.81 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 491 | 137.94 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 532 | 138.07 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 8 |
| 537 | 138.07 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 557 | 138.14 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 560 | 138.15 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 563 | 138.15 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 600 | 138.25 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 691 | 138.60 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 712 | 138.70 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 15 |
| 725 | 138.73 | temperature | 20 | 30 | < th | dose independent | rect. | 12 | 23 |
| 800 | 138.95 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 812 | 139.00 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 813 | 139.00 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 23 |
| 814 | 139.00 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 23 |
| 820 | 139.02 | temperature | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 825 | 139.04 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 848 | 139.11 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 855 | 139.13 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 23 |
| 948 | 139.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 12 |
| 971 | 139.42 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 6 |
| 975 | 139.42 | temperature | 20 | 30 | > th | dose independent | rect. | 21 | 23 |