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Os08g0115800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAM (No apical meristem)-like protein (No apical meristem family protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.3 (0.039) R2 : 0.548
β1 : 2.17 (0.147) R2dD : 0.246 R2D : 0.244
β2 : 0.878 (0.0928) R2dC : 0.0898 R2C : 0.0802
β3 : -1.84 (0.207) R2dE : 0.0924 R2E : 0.185
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.582 (0.0868) R2dN8 : 0.0673 R2N8 : 0.0466
σ : 0.717
deviance : 236.77
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_____
C
peak time of C : 10.1
E
wheather : radiation
threshold : 2.185
memory length : 1447
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.41 0.704 7.16 2.66 0.801 -3.76 0.0694 -7.54 0.727 9.98 0.1869 1459 -- --
236.46 0.716 7.3 2.16 0.865 -1.84 0.32 -- 0.594 10.4 2.152 1446 -- --
224.4 0.698 7.16 2.67 0.824 -3.75 -- -7.55 0.728 10 0.1839 1455 -- --
236.77 0.717 7.3 2.17 0.878 -1.84 -- -- 0.582 10.1 2.185 1447 -- --
247.18 0.732 7.2 2.6 -- -3.9 -- -7.28 0.723 -- 0.129 1505 -- --
277.51 0.781 7.24 2.54 0.928 -- 0.185 -- 0.836 10.1 -- -- -- --
277.64 0.78 7.24 2.54 0.927 -- -- -- 0.836 10.1 -- -- -- --
260.82 0.752 7.36 2.14 -- -2.38 -- -- 0.475 -- 2.29 1546 -- --
336.29 0.854 7.3 -- 0.968 -2.8 -- -- 0.388 10.4 0.1598 1429 -- --
329.65 0.848 7.27 2.53 -- -- -- -- 0.835 -- -- -- -- --
448.03 0.99 7.3 -- 0.917 -- -- -- 0.553 9.92 -- -- -- --
354.54 0.877 7.39 -- -- -3.41 -- -- 0.282 -- 0.17 1509 -- --
498.49 1.04 7.33 -- -- -- -- -- 0.554 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.88 wind 7.0 43200 > th dose independent rect. 13 1
2 209.40 wind 9.0 43200 < th dose independent rect. 14 3
3 209.53 wind 7.0 43200 < th dose independent rect. 13 1
4 209.55 wind 9.0 43200 > th dose independent rect. 14 3
5 209.57 wind 9.0 43200 > th dose independent rect. 13 6
6 209.64 wind 7.0 43200 > th dose dependent rect. 12 5
9 210.06 wind 9.0 43200 < th dose independent rect. 13 5
10 210.19 wind 9.0 43200 < th dose independent rect. 11 8
24 210.82 wind 9.0 43200 > th dose independent rect. 11 11
31 211.44 wind 1.0 43200 < th dose dependent rect. 7 1
38 211.87 wind 9.0 43200 < th dose independent rect. 11 11
42 212.18 wind 9.0 43200 > th dose dependent rect. 11 9
81 214.99 wind 9.0 14400 > th dose independent rect. 16 1
82 215.01 humidity 80.0 14400 < th dose independent rect. 22 1
84 215.02 radiation 40.0 43200 < th dose dependent rect. 21 8
92 215.31 radiation 10.0 43200 < th dose dependent rect. 18 12
95 215.45 radiation 40.0 43200 < th dose dependent rect. 23 6
112 215.71 radiation 40.0 43200 < th dose dependent rect. 19 10
119 215.74 radiation 40.0 43200 < th dose dependent rect. 18 12
132 215.88 humidity 80.0 14400 > th dose independent rect. 21 2
143 216.24 radiation 10.0 43200 < th dose dependent rect. 3 2
151 216.42 humidity 90.0 43200 > th dose dependent rect. 3 1
157 216.53 radiation 40.0 43200 < th dose dependent rect. 17 9
164 216.64 radiation 40.0 43200 < th dose dependent rect. 17 3
172 216.66 radiation 40.0 43200 < th dose dependent rect. 17 5
209 216.90 wind 9.0 43200 < th dose independent rect. 16 1
222 217.14 humidity 60.0 43200 < th dose dependent rect. 10 1
236 217.51 humidity 90.0 14400 < th dose dependent rect. 21 2
248 217.64 radiation 1.0 43200 > th dose dependent rect. 17 12
256 217.75 humidity 90.0 14400 < th dose dependent rect. 20 4
267 217.98 radiation 1.0 43200 > th dose dependent rect. 17 2
290 218.19 wind 5.0 4320 > th dose dependent rect. 17 2
298 218.35 radiation 10.0 4320 < th dose dependent rect. 3 2
310 218.68 radiation 1.0 43200 < th dose independent rect. 21 8
317 218.86 wind 1.0 43200 > th dose independent rect. 20 1
319 218.88 radiation 10.0 4320 < th dose dependent rect. 21 8
322 218.94 radiation 1.0 43200 < th dose independent rect. 19 10
323 218.98 radiation 1.0 43200 < th dose independent rect. 24 5
324 218.99 humidity 60.0 43200 < th dose independent rect. 10 1
328 219.02 radiation 1.0 43200 < th dose independent rect. 3 2
351 219.19 radiation 1.0 43200 > th dose independent rect. 4 1
363 219.19 radiation 1.0 43200 > th dose dependent rect. 4 1
381 219.27 wind 5.0 4320 > th dose dependent rect. 17 4
387 219.34 radiation 10.0 4320 < th dose dependent rect. 1 4
390 219.47 wind 1.0 43200 < th dose dependent rect. 20 1
398 219.62 humidity 90.0 14400 > th dose independent rect. 23 2
409 219.89 radiation 20.0 14400 > th dose dependent rect. 16 2
434 220.23 humidity 90.0 43200 > th dose independent rect. 3 1
458 220.45 radiation 10.0 43200 < th dose independent rect. 18 12
490 220.71 wind 5.0 4320 > th dose dependent rect. 14 7
554 221.15 wind 5.0 4320 > th dose independent rect. 17 4
574 221.29 humidity 60.0 43200 > th dose independent rect. 8 3
591 221.31 wind 7.0 4320 < th dose independent rect. 17 2
594 221.33 wind 5.0 4320 > th dose independent rect. 15 7
609 221.47 humidity 90.0 43200 > th dose independent rect. 3 3
630 221.58 radiation 10.0 43200 < th dose independent rect. 18 8
653 221.70 radiation 10.0 43200 < th dose independent rect. 18 1
656 221.72 radiation 10.0 43200 < th dose independent rect. 18 4
661 221.74 radiation 1.0 43200 > th dose independent rect. 9 1
662 221.74 wind 5.0 4320 < th dose independent rect. 17 4
665 221.76 wind 5.0 4320 < th dose independent rect. 16 6
671 221.80 radiation 1.0 43200 < th dose independent rect. 9 1
674 221.85 radiation 1.0 43200 > th dose independent rect. 7 4
686 221.89 radiation 1.0 43200 < th dose independent rect. 7 4
702 221.97 wind 5.0 4320 > th dose independent rect. 13 9
708 222.03 humidity 60.0 43200 > th dose dependent rect. 16 1
728 222.18 humidity 60.0 43200 > th dose independent rect. 5 6
758 222.34 radiation 1.0 43200 < th dose dependent rect. 6 5
771 222.34 humidity 60.0 43200 < th dose dependent rect. 17 19
784 222.40 humidity 90.0 14400 > th dose dependent rect. 5 2
787 222.42 radiation 1.0 43200 < th dose dependent rect. 7 3
792 222.45 humidity 90.0 43200 > th dose independent rect. 23 6
812 222.48 humidity 70.0 43200 > th dose independent rect. 16 1
819 222.52 humidity 50.0 14400 > th dose dependent rect. 6 1
892 222.69 wind 1.0 43200 < th dose independent rect. 20 1
924 222.80 humidity 60.0 43200 < th dose independent rect. 19 16
952 222.94 precipitation 0.1 14400 > th dose independent rect. 4 3
954 222.95 precipitation 0.1 14400 < th dose independent rect. 4 3
955 222.95 precipitation 0.1 14400 < th dose dependent rect. 4 3
956 222.96 wind 5.0 4320 < th dose independent rect. 13 9