FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0113600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0282) R2 : 0.00392
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0795 (0.0593) R2dN8 : 0.00506 R2N8 : 0.00392
σ : 0.53
deviance : 129.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.98 0.493 2.91 0.0521 0.494 0.811 0.0582 -0.0128 0.126 2.03 81 1317 -- --
109.98 0.488 2.91 0.0514 0.494 0.811 0.059 -- 0.126 2.03 80.98 1316 -- --
110 0.488 2.91 0.0513 0.494 0.81 -- -0.0259 0.126 2.07 80.95 1316 -- --
110 0.488 2.91 0.0491 0.494 0.809 -- -- 0.126 2.07 80.97 1316 -- --
118.13 0.506 2.91 0.109 -- 0.974 -- -0.161 0.114 -- 78.97 1662 -- --
118.62 0.511 2.92 0.0314 0.417 -- -0.0173 -- 0.0751 1.96 -- -- -- --
118.62 0.51 2.92 0.0319 0.416 -- -- -- 0.0752 1.94 -- -- -- --
118.1 0.506 2.91 0.049 -- 0.959 -- -- 0.13 -- 80.14 1670 -- --
110.06 0.489 2.91 -- 0.495 0.807 -- -- 0.12 2.07 80.94 1316 -- --
129.08 0.531 2.92 0.0491 -- -- -- -- 0.0849 -- -- -- -- --
118.65 0.51 2.93 -- 0.417 -- -- -- 0.0717 1.95 -- -- -- --
118.16 0.506 2.91 -- -- 0.959 -- -- 0.125 -- 80.46 1670 -- --
129.14 0.53 2.92 -- -- -- -- -- 0.0795 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.27 humidity 70 720 > th dose dependent rect. 19 1
3 107.51 radiation 10 720 < th dose independent rect. 14 6
4 107.62 humidity 60 720 > th dose dependent rect. 15 5
7 107.92 radiation 10 720 < th dose independent rect. 14 13
10 108.08 wind 1 90 < th dose dependent rect. 13 2
24 108.49 humidity 80 720 > th dose independent rect. 15 5
35 108.63 radiation 10 1440 < th dose independent rect. 15 1
36 108.63 humidity 80 720 > th dose independent rect. 12 8
38 108.64 humidity 60 720 > th dose dependent rect. 13 14
46 108.79 temperature 30 10 > th dose independent rect. 14 1
59 108.92 humidity 80 720 > th dose independent rect. 9 11
66 109.00 humidity 60 720 > th dose dependent sin 17 NA
76 109.07 humidity 80 1440 > th dose independent rect. 6 11
92 109.12 radiation 10 720 < th dose dependent rect. 8 12
93 109.12 humidity 60 720 > th dose dependent rect. 9 18
98 109.14 humidity 80 720 > th dose independent rect. 8 20
110 109.18 humidity 80 720 > th dose independent rect. 9 18
115 109.20 humidity 80 1440 > th dose independent sin 2 NA
121 109.22 radiation 10 720 < th dose dependent rect. 22 22
125 109.25 humidity 70 720 > th dose dependent rect. 9 11
131 109.27 humidity 80 1440 < th dose independent rect. 7 10
138 109.29 radiation 20 720 < th dose dependent rect. 13 7
168 109.38 humidity 80 1440 < th dose independent sin 2 NA
177 109.40 wind 1 90 < th dose independent rect. 13 1
186 109.43 humidity 80 720 > th dose independent rect. 12 15
196 109.46 humidity 70 1440 > th dose independent rect. 10 3
264 109.64 radiation 10 720 < th dose independent sin 14 NA
329 109.80 temperature 20 10 > th dose independent rect. 19 9
352 109.82 humidity 80 720 > th dose independent sin 20 NA
361 109.84 temperature 20 30 > th dose independent rect. 19 12
362 109.84 humidity 80 1440 > th dose independent rect. 19 22
390 109.89 humidity 70 1440 > th dose dependent rect. 9 6
398 109.91 humidity 70 1440 < th dose independent rect. 10 3
413 109.94 humidity 80 720 < th dose independent rect. 12 10
420 109.94 humidity 70 1440 > th dose dependent rect. 10 4
443 109.97 humidity 80 1440 < th dose independent rect. 19 22
554 110.10 humidity 80 720 > th dose independent sin 17 NA
564 110.11 humidity 60 30 > th dose dependent rect. 19 1
725 110.29 wind 1 720 < th dose independent rect. 16 3
731 110.29 radiation 10 1440 > th dose independent rect. 13 22
759 110.32 radiation 20 720 < th dose dependent rect. 14 13
770 110.33 humidity 90 1440 < th dose dependent rect. 23 17
797 110.35 humidity 90 1440 < th dose dependent rect. 1 15
798 110.36 humidity 80 10 > th dose independent rect. 19 1
837 110.39 humidity 80 720 < th dose independent sin 20 NA
839 110.39 radiation 10 1440 > th dose independent rect. 8 3
875 110.40 radiation 10 720 < th dose dependent rect. 8 19
881 110.41 radiation 10 1440 > th dose independent rect. 8 9
890 110.41 radiation 10 720 > th dose independent rect. 11 21
927 110.43 humidity 80 720 < th dose independent rect. 10 15
967 110.45 temperature 20 90 > th dose independent rect. 23 8
979 110.45 radiation 20 1440 < th dose dependent rect. 8 8