Os08g0113500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAC transcription factor.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0113500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to NAC transcription factor.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.97 | 0.41 | 8.14 | 1.74 | 1.16 | 1.34 | -0.126 | -0.632 | 0.593 | 8.06 | 30.3 | 259 | -- | -- |
| 76.38 | 0.407 | 8.15 | 1.63 | 1.16 | 1.33 | -0.175 | -- | 0.568 | 8.06 | 30.1 | 258 | -- | -- |
| 76.01 | 0.406 | 8.14 | 1.74 | 1.16 | 1.33 | -- | -0.656 | 0.594 | 8.06 | 30.27 | 259 | -- | -- |
| 76.47 | 0.407 | 8.15 | 1.63 | 1.16 | 1.34 | -- | -- | 0.569 | 8.07 | 30.07 | 259 | -- | -- |
| 128.4 | 0.528 | 8.14 | 1.98 | -- | 2.32 | -- | -0.935 | 0.696 | -- | 37.74 | 461 | -- | -- |
| 99.59 | 0.468 | 8.2 | 1.3 | 1.44 | -- | -0.141 | -- | 0.305 | 7.16 | -- | -- | -- | -- |
| 99.64 | 0.467 | 8.2 | 1.3 | 1.44 | -- | -- | -- | 0.306 | 7.17 | -- | -- | -- | -- |
| 128.83 | 0.529 | 8.17 | 1.81 | -- | 2.23 | -- | -- | 0.678 | -- | 32.92 | 469 | -- | -- |
| 138.82 | 0.549 | 8.22 | -- | 1.3 | 0.656 | -- | -- | 0.239 | 7.44 | 42.1 | 263 | -- | -- |
| 208.67 | 0.675 | 8.23 | 1.32 | -- | -- | -- | -- | 0.331 | -- | -- | -- | -- | -- |
| 143.88 | 0.561 | 8.23 | -- | 1.45 | -- | -- | -- | 0.162 | 7.11 | -- | -- | -- | -- |
| 209.52 | 0.674 | 8.22 | -- | -- | 1.66 | -- | -- | 0.379 | -- | 43.87 | 429 | -- | -- |
| 254.79 | 0.745 | 8.27 | -- | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 2 | 70.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 16 | 73.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 22 | 73.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 36 | 74.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 71 | 75.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 82 | 75.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 89 | 75.85 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 102 | 76.02 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 113 | 76.16 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 118 | 76.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 173 | 76.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 175 | 76.95 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 177 | 76.96 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 187 | 77.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 13 |
| 293 | 77.98 | temperature | 30 | 10 | < th | dose dependent | sin | 19 | NA |
| 347 | 78.41 | temperature | 15 | 10 | > th | dose dependent | sin | 20 | NA |
| 380 | 78.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 394 | 78.73 | humidity | 70 | 270 | > th | dose dependent | rect. | 9 | 13 |
| 413 | 78.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 452 | 78.99 | humidity | 90 | 270 | < th | dose independent | rect. | 8 | 10 |
| 453 | 78.99 | humidity | 70 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 512 | 79.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 526 | 79.31 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 18 |
| 550 | 79.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 561 | 79.44 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 579 | 79.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 596 | 79.64 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 605 | 79.72 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 20 |
| 652 | 79.88 | humidity | 80 | 270 | > th | dose independent | rect. | 4 | 18 |
| 711 | 80.09 | humidity | 70 | 270 | > th | dose dependent | sin | 22 | NA |
| 720 | 80.14 | humidity | 80 | 270 | > th | dose independent | rect. | 8 | 13 |
| 725 | 80.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 936 | 80.89 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 10 |
| 969 | 80.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 1000 | 81.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 17 |