Os08g0113200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0113200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.05 | 0.342 | 10.3 | 0.832 | 1.6 | 0.176 | -0.362 | -6.26 | 0.188 | 18.6 | 29.6 | 4063 | -- | -- |
| 54.89 | 0.345 | 10.1 | 1.79 | 1.57 | -0.459 | -0.4 | -- | 0.226 | 18.7 | 30.55 | 2668 | -- | -- |
| 53.37 | 0.34 | 10.3 | 0.843 | 1.6 | 0.173 | -- | -6.24 | 0.189 | 18.6 | 29.6 | 4032 | -- | -- |
| 54.66 | 0.344 | 10.1 | 1.82 | 1.6 | -0.555 | -- | -- | 0.185 | 18.7 | 30.2 | 2629 | -- | -- |
| 182.17 | 0.629 | 10.4 | -0.348 | -- | 0.732 | -- | -10.9 | 0.0335 | -- | 28.88 | 2764 | -- | -- |
| 66.33 | 0.382 | 10.1 | 1.67 | 1.62 | -- | -0.332 | -- | 0.294 | 18.5 | -- | -- | -- | -- |
| 66.61 | 0.382 | 10.1 | 1.68 | 1.62 | -- | -- | -- | 0.293 | 18.5 | -- | -- | -- | -- |
| 184.56 | 0.633 | 10.1 | 1.83 | -- | -0.593 | -- | -- | 0.169 | -- | 29.75 | 5686 | -- | -- |
| 138.26 | 0.548 | 10.2 | -- | 1.59 | -0.259 | -- | -- | 0.0511 | 18.7 | 30.6 | 2607 | -- | -- |
| 202.84 | 0.665 | 10.1 | 1.64 | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
| 140.92 | 0.555 | 10.2 | -- | 1.6 | -- | -- | -- | 0.106 | 18.6 | -- | -- | -- | -- |
| 267.73 | 0.762 | 10.1 | -- | -- | -0.313 | -- | -- | 0.017 | -- | 30.44 | 5660 | -- | -- |
| 273.72 | 0.772 | 10.1 | -- | -- | -- | -- | -- | 0.0776 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.23 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 5 | 49.94 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 12 | 51.13 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 24 | 51.42 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 28 | 51.58 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 30 | 51.69 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 34 | 51.78 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 42 | 51.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 43 | 51.98 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 45 | 52.00 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 48 | 52.03 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 50 | 52.04 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 51 | 52.04 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 53 | 52.05 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 54 | 52.06 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 66 | 52.15 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 69 | 52.20 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 71 | 52.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 101 | 52.47 | temperature | 30.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 102 | 52.48 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 105 | 52.50 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 109 | 52.54 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 118 | 52.62 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 124 | 52.66 | temperature | 30.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 172 | 52.79 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 177 | 52.81 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 205 | 52.90 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 209 | 52.91 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 260 | 52.94 | temperature | 30.0 | 4320 | > th | dose dependent | sin | 15 | NA |
| 263 | 52.94 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 282 | 52.99 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 286 | 53.00 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 290 | 53.01 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 291 | 53.01 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 13 |
| 312 | 53.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 316 | 53.02 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 319 | 53.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 338 | 53.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 345 | 53.04 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 364 | 53.05 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 366 | 53.05 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 392 | 53.06 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 477 | 53.13 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 479 | 53.13 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 547 | 53.17 | temperature | 30.0 | 4320 | > th | dose dependent | no | NA | NA |
| 700 | 53.24 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 10 | 9 |
| 781 | 53.27 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 957 | 53.30 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 977 | 53.31 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 10 |
| 984 | 53.32 | temperature | 30.0 | 4320 | > th | dose independent | sin | 16 | NA |