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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0113000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 47 precursor (EC 1.11.1.7) (Atperox P47) (ATP32).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.1 (0.0939) R2 : 0.399
β1 : -1.96 (0.384) R2dD : 0.0563 R2D : -0.152
β2 : 0.962 (0.214) R2dC : 0.0243 R2C : -0.0396
β3 : -0.823 (0.374) R2dE : 0.0113 R2E : -0.0886
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -26.9 (1.69) R2dD*E : 0.546 R2D*E : 0.332
γ1 : -0.196 (0.201) R2dN8 : 0.000374 R2N8 : -0.0516
σ : 1.58
deviance : 1153.42
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C
peak time of C : 3.21
E
wheather : radiation
threshold : 1.08
memory length : 5342
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1172.39 1.61 6.11 -2.41 1.02 -0.869 -1.58 -27.3 -0.215 3.03 1.055 5625 18 1.08
1788.25 1.98 6.73 0.5 0.6 -1.34 -2.17 -- -0.688 2.5 -36.83 10114 18 1.4
1153.42 1.58 6.1 -1.96 0.962 -0.823 -- -26.9 -0.196 3.21 1.08 5342 18 1
1803.68 1.98 6.73 0.557 0.596 -1.42 -- -- -0.676 2.39 -36.81 10114 18 1.4
1197.76 1.61 6.09 -1.82 -- -0.603 -- -26.9 -0.0413 -- 1.071 5340 18 1.24
1813.97 2 6.75 0.476 0.718 -- -2.23 -- -0.767 3.19 -- -- -- --
1829.84 2 6.74 0.521 0.718 -- -- -- -0.754 3.57 -- -- -- --
1824.36 1.99 6.73 0.582 -- -1.54 -- -- -0.671 -- -36.62 10114 18 1.42
1811.95 1.98 6.73 -- 0.623 -1.38 -- -- -0.72 2.48 -36.58 10113 18 1.42
1858.61 2.01 6.74 0.551 -- -- -- -- -0.735 -- -- -- -- --
1837 2 6.75 -- 0.729 -- -- -- -0.812 3.57 -- -- -- --
1833.39 1.99 6.73 -- -- -1.51 -- -- -0.72 -- -36.59 10113 18 1.42
1866.63 2.02 6.75 -- -- -- -- -- -0.796 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1166.42 wind 1 43200 < th dose dependent rect. 2 3
2 1167.45 wind 1 43200 > th dose independent rect. 2 2
3 1169.00 temperature 25 43200 < th dose dependent rect. 9 1
4 1169.09 temperature 25 43200 < th dose dependent rect. 8 3
8 1172.79 temperature 25 43200 > th dose independent rect. 10 1
9 1173.24 wind 1 43200 < th dose independent rect. 2 2
11 1173.49 temperature 25 43200 < th dose independent rect. 10 1
25 1177.24 temperature 20 43200 > th dose independent rect. 4 1
27 1177.49 temperature 20 43200 < th dose independent rect. 4 1
31 1178.43 temperature 20 43200 > th dose independent rect. 7 1
34 1178.77 temperature 20 43200 > th dose independent rect. 4 5
36 1179.06 temperature 20 43200 > th dose independent rect. 4 18
53 1180.77 temperature 20 43200 < th dose independent rect. 3 19
75 1181.85 temperature 20 43200 < th dose independent rect. 4 5
96 1182.58 temperature 20 43200 > th dose independent rect. 4 13
106 1182.89 temperature 20 43200 < th dose independent rect. 7 1
122 1183.45 temperature 20 43200 < th dose independent rect. 7 22
123 1183.49 temperature 20 43200 > th dose independent sin 1 NA
137 1183.70 temperature 20 43200 > th dose independent rect. 7 23
147 1183.87 temperature 20 43200 > th dose independent rect. 14 22
157 1183.96 temperature 20 43200 < th dose independent rect. 15 21
162 1183.99 temperature 20 43200 > th dose independent rect. 20 23
185 1184.22 temperature 20 43200 > th dose independent no NA NA
207 1184.31 temperature 20 43200 < th dose independent rect. 20 23
217 1184.37 temperature 20 43200 < th dose independent no NA NA
219 1184.37 temperature 20 43200 > th dose independent rect. 18 23
222 1184.39 temperature 20 43200 > th dose independent rect. 10 23
223 1184.39 temperature 20 43200 < th dose independent rect. 18 23
227 1184.41 temperature 20 43200 > th dose independent rect. 20 16
229 1184.41 temperature 20 43200 < th dose independent rect. 10 23
230 1184.42 temperature 20 43200 < th dose independent rect. 20 16
371 1185.38 temperature 20 43200 < th dose independent sin 5 NA
431 1185.79 temperature 20 43200 < th dose independent rect. 4 13
543 1186.73 temperature 20 43200 < th dose independent rect. 14 15
649 1187.93 temperature 20 43200 < th dose independent rect. 20 9
771 1190.63 temperature 25 43200 < th dose dependent sin 23 NA
884 1193.82 radiation 1 14400 < th dose independent rect. 18 11