Os08g0112800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rickettsia 17 kDa surface antigen family protein.
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Os08g0112800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rickettsia 17 kDa surface antigen family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.49 | 0.159 | 13.4 | 0.363 | 0.204 | 0.472 | -0.0167 | -0.241 | 0.292 | 21.9 | 50 | 1030 | -- | -- |
| 11.51 | 0.158 | 13.4 | 0.354 | 0.204 | 0.421 | 0.00398 | -- | 0.292 | 21.8 | 50.31 | 1023 | -- | -- |
| 11.49 | 0.158 | 13.4 | 0.363 | 0.204 | 0.471 | -- | -0.231 | 0.292 | 21.9 | 50.16 | 1017 | -- | -- |
| 11.51 | 0.158 | 13.4 | 0.353 | 0.204 | 0.417 | -- | -- | 0.294 | 21.8 | 50.18 | 1017 | -- | -- |
| 13.75 | 0.173 | 13.4 | 0.306 | -- | 0.195 | -- | 0.493 | 0.287 | -- | 54 | 1332 | -- | -- |
| 13.28 | 0.171 | 13.4 | 0.275 | 0.178 | -- | -0.0854 | -- | 0.323 | 21.4 | -- | -- | -- | -- |
| 13.31 | 0.171 | 13.4 | 0.279 | 0.178 | -- | -- | -- | 0.323 | 21.3 | -- | -- | -- | -- |
| 13.88 | 0.173 | 13.4 | 0.347 | -- | 0.337 | -- | -- | 0.298 | -- | 50.17 | 1220 | -- | -- |
| 13.94 | 0.174 | 13.4 | -- | 0.177 | 0.331 | -- | -- | 0.268 | 21.6 | 51 | 21276 | -- | -- |
| 15.16 | 0.182 | 13.4 | 0.28 | -- | -- | -- | -- | 0.323 | -- | -- | -- | -- | -- |
| 15.35 | 0.183 | 13.4 | -- | 0.179 | -- | -- | -- | 0.292 | 21.5 | -- | -- | -- | -- |
| 15.45 | 0.183 | 13.4 | -- | -- | 0.277 | -- | -- | 0.279 | -- | 52 | 30375 | -- | -- |
| 17.23 | 0.194 | 13.4 | -- | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.22 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 2 | 11.22 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 11 |
| 6 | 11.23 | humidity | 50 | 1440 | > th | dose independent | sin | 12 | NA |
| 19 | 11.24 | humidity | 50 | 1440 | < th | dose independent | sin | 12 | NA |
| 20 | 11.24 | humidity | 50 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 46 | 11.33 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 62 | 11.34 | humidity | 60 | 1440 | < th | dose dependent | sin | 12 | NA |
| 156 | 11.50 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 203 | 11.53 | humidity | 70 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 217 | 11.54 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 301 | 11.58 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 302 | 11.58 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 326 | 11.59 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 347 | 11.60 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 359 | 11.61 | wind | 3 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 474 | 11.65 | wind | 3 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 475 | 11.65 | wind | 5 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 602 | 11.68 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 623 | 11.69 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 657 | 11.70 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 734 | 11.70 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 17 |
| 744 | 11.70 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 20 |
| 756 | 11.70 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 790 | 11.71 | humidity | 50 | 1440 | > th | dose independent | no | NA | NA |
| 791 | 11.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 794 | 11.71 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 795 | 11.71 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 843 | 11.71 | humidity | 50 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 857 | 11.71 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 889 | 11.72 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 893 | 11.72 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 966 | 11.72 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 969 | 11.73 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 980 | 11.73 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 988 | 11.73 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 5 |