Os08g0112500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclin-dependent protein kinase-like protein.
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Os08g0112500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclin-dependent protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.74 | 0.192 | 10.3 | 0.181 | 0.325 | -0.179 | -0.232 | -1.26 | -0.0745 | 6.61 | 9.328 | 20 | -- | -- |
| 17.6 | 0.195 | 10.3 | 0.367 | 0.305 | -0.24 | -0.236 | -- | -0.0155 | 7.09 | 21.8 | 49 | -- | -- |
| 16.85 | 0.193 | 10.3 | 0.177 | 0.329 | -0.159 | -- | -1.22 | -0.0753 | 6.52 | 8.573 | 17 | -- | -- |
| 17.72 | 0.196 | 10.3 | 0.355 | 0.312 | -0.208 | -- | -- | -0.0205 | 6.72 | 21.88 | 56 | -- | -- |
| 21.49 | 0.216 | 10.3 | 0.244 | -- | -0.401 | -- | -1.13 | -0.0341 | -- | -4.033 | 184 | -- | -- |
| 18.42 | 0.201 | 10.3 | 0.31 | 0.362 | -- | -0.0297 | -- | -0.0548 | 6.04 | -- | -- | -- | -- |
| 18.42 | 0.201 | 10.3 | 0.31 | 0.362 | -- | -- | -- | -0.0548 | 6.01 | -- | -- | -- | -- |
| 21.4 | 0.215 | 10.3 | 0.368 | -- | -0.376 | -- | -- | 0.00426 | -- | 22.13 | 272 | -- | -- |
| 20.79 | 0.212 | 10.3 | -- | 0.346 | -0.0946 | -- | -- | -0.0776 | 6.31 | 21.98 | 60 | -- | -- |
| 25.21 | 0.235 | 10.3 | 0.32 | -- | -- | -- | -- | -0.0465 | -- | -- | -- | -- | -- |
| 20.95 | 0.214 | 10.3 | -- | 0.367 | -- | -- | -- | -0.0893 | 5.97 | -- | -- | -- | -- |
| 25.02 | 0.233 | 10.3 | -- | -- | -0.315 | -- | -- | -0.0549 | -- | 24 | 272 | -- | -- |
| 27.92 | 0.247 | 10.3 | -- | -- | -- | -- | -- | -0.0821 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.53 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 13 | 15.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 48 | 15.99 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 13 |
| 53 | 16.02 | temperature | 20.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 54 | 16.02 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 82 | 16.10 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 11 |
| 96 | 16.12 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 122 | 16.16 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 128 | 16.17 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 159 | 16.20 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 3 |
| 169 | 16.21 | temperature | 15.0 | 720 | > th | dose independent | rect. | 12 | 10 |
| 170 | 16.21 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 13 |
| 191 | 16.22 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 237 | 16.26 | temperature | 15.0 | 720 | > th | dose independent | rect. | 10 | 13 |
| 266 | 16.28 | wind | 9.0 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 286 | 16.30 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 6 |
| 287 | 16.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 14 |
| 304 | 16.31 | wind | 5.0 | 90 | < th | dose independent | rect. | 13 | 15 |
| 327 | 16.33 | temperature | 15.0 | 720 | > th | dose independent | rect. | 18 | 5 |
| 328 | 16.33 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 329 | 16.33 | wind | 7.0 | 720 | < th | dose independent | rect. | 22 | 21 |
| 338 | 16.33 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 11 |
| 366 | 16.35 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 385 | 16.36 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 416 | 16.37 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 3 |
| 417 | 16.37 | wind | 5.0 | 90 | < th | dose independent | rect. | 15 | 13 |
| 503 | 16.40 | wind | 9.0 | 90 | < th | dose dependent | rect. | 13 | 15 |
| 562 | 16.43 | wind | 7.0 | 720 | < th | dose independent | rect. | 7 | 20 |
| 591 | 16.44 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 610 | 16.45 | temperature | 25.0 | 270 | > th | dose independent | sin | 4 | NA |
| 613 | 16.45 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 11 |
| 614 | 16.45 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 663 | 16.46 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 665 | 16.47 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 669 | 16.47 | wind | 9.0 | 720 | < th | dose independent | rect. | 21 | 23 |
| 698 | 16.48 | wind | 7.0 | 720 | < th | dose independent | rect. | 13 | 14 |
| 718 | 16.48 | wind | 9.0 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 726 | 16.49 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 729 | 16.49 | wind | 7.0 | 720 | < th | dose independent | rect. | 6 | 13 |
| 734 | 16.49 | wind | 7.0 | 720 | < th | dose independent | rect. | 7 | 18 |
| 765 | 16.50 | temperature | 20.0 | 720 | > th | dose independent | sin | 0 | NA |
| 769 | 16.50 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 12 |
| 804 | 16.50 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 862 | 16.53 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 863 | 16.53 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 892 | 16.54 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 893 | 16.54 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 894 | 16.54 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 10 |
| 902 | 16.54 | wind | 9.0 | 720 | < th | dose independent | rect. | 6 | 23 |
| 905 | 16.54 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 943 | 16.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 987 | 16.56 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 997 | 16.56 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 13 | 3 |