Os08g0112400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0112400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.92 | 0.367 | 7.34 | 1.55 | 1.42 | 0.905 | 0.091 | -1.52 | 0.151 | 19.5 | 28.1 | 993 | -- | -- |
| 62.77 | 0.372 | 7.38 | 1.19 | 1.35 | 0.999 | 0.127 | -- | 0.0248 | 18.7 | 23.94 | 1329 | -- | -- |
| 60.94 | 0.364 | 7.33 | 1.56 | 1.42 | 0.903 | -- | -1.56 | 0.153 | 19.5 | 28.18 | 988 | -- | -- |
| 62.81 | 0.372 | 7.38 | 1.19 | 1.35 | 1 | -- | -- | 0.0255 | 18.7 | 23.94 | 1329 | -- | -- |
| 155.78 | 0.581 | 7.3 | 1.53 | -- | 0.986 | -- | -1.27 | 0.146 | -- | 27.5 | 1375 | -- | -- |
| 76.67 | 0.411 | 7.42 | 0.969 | 1.35 | -- | 0.202 | -- | -0.133 | 19.2 | -- | -- | -- | -- |
| 76.78 | 0.41 | 7.42 | 0.965 | 1.35 | -- | -- | -- | -0.133 | 19.1 | -- | -- | -- | -- |
| 156.99 | 0.584 | 7.33 | 1.28 | -- | 1.11 | -- | -- | 0.0738 | -- | 24.6 | 1428 | -- | -- |
| 96.87 | 0.461 | 7.42 | -- | 1.34 | 0.539 | -- | -- | -0.168 | 18.9 | 23.98 | 496 | -- | -- |
| 173.14 | 0.615 | 7.39 | 0.94 | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
| 101.35 | 0.471 | 7.44 | -- | 1.34 | -- | -- | -- | -0.24 | 19.2 | -- | -- | -- | -- |
| 190.51 | 0.645 | 7.39 | -- | -- | 0.59 | -- | -- | -0.183 | -- | 23.98 | 496 | -- | -- |
| 196.45 | 0.654 | 7.41 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 25 | 59.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 26 | 59.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 49 | 59.50 | temperature | 25 | 1440 | < th | dose dependent | sin | 19 | NA |
| 73 | 59.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 92 | 59.79 | temperature | 15 | 720 | > th | dose dependent | sin | 15 | NA |
| 100 | 59.89 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 185 | 60.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 230 | 60.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 20 |
| 396 | 60.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 444 | 60.85 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 626 | 61.16 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 19 |
| 762 | 61.37 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 864 | 61.51 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 18 |